Mark Yandell, Ph.D.

Research Interests

  • Comparative Genomics
  • bioinformatics
  • Human Population Genetics
  • Computational Biology
  • Image Processing, Computer-Assisted

Languages

  • English

Academic Information

  • Departments: Biomedical Informatics - Adjunct Associate Professor, Human Genetics - Professor

Academic Office Information

  • (801) 581-4422
  • George and Dolores Eccles Institute of Human Genetics
    Human Genetics
    15 N 2030 E, Room: 2100
    Salt Lake City, UT 84112

Education History

Type School Degree
Other Training Marine Biological Laboratories
Advanced Quantitative Light Microscopy Course
Postdoctoral Fellowship Washington University
Computational Biology
Postdoctoral Fellow
Other Training Marine Biological Laboratories
Molecular Evolution
Doctoral Training University of Colorado
Molecular, Cellular, & Developmental Biology
Ph.D.
Undergraduate University of Texas
Biology
B.A.

Selected Publications

Journal Article

  1. Manuck TA Watkins WS, Esplin MS, Biggio J, Bukowski R, Parry S, Zhan H, Huang H, Andrews W, Saade G, Sadovsky Y, Reddy UM, Ilekis J1 Yandell M, Varner MW, Jorde LB, Eunice Kennedy Shriver National Institute of Child Health and Human Development NICHD Genomics and Proteomics Network for Preterm Birth Research GPN-PBR (1/31/2017). Pharmacogenomics of 17-alpha hydroxyprogesterone caproate for recurrent preterm birth: a case-control study. BJOG, doi: 10.1111/14.
  2. Cone KR, Kronenberg ZN, Yandell M, Elde NC (1/23/2017). Emergence of a viral RNA polymerase variant during gene copy number amplification promotes rapid evolution of vaccinia virus. J Virol, pii, e01428-16.
  3. Majoros WH, Campbell MS, Holt C, DeNardo E, Ware D, Allen AS, Yandell M, Reddy TE (12/23/2016). High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. Bioinformatics, pii, btw799.
  4. Hu H1 Coon H2 Li M3 Yandell M, Huff CD (2016). VARPRISM: incorporating variant prioritization in tests of de novo mutation association. Genome Medicine, 8(1), 91.
  5. Manuck TA, Watkins S, Esplin MS, Parry S, Zhang H, Huang H, Biggio JR, Bukowski R, Saade G, Andrews W, Baldwin D, Sadovsky Y, Reddy U, Ilekis J, Varner MW, Yandell M, Jorde LB (2016). Genetic variation may influence response to 17-alpha hydroxyprogesterone caproate (17P) for recurrent preterm birth (PTB) prevention. Am J Obstet Gynecol, 214(1), S9-S10.
  6. Graf EH, Simmon KE, Tardif KD, Hymas W, Flygare S, Eilbeck K, Yandell M, Schlaberg R (2016). Unbiased Detection of Respiratory Viruses Using RNA-seq-Based Metagenomics: A Systematic Comparison to A Commercial PCR Panel. J Clin Microbiol, 54(4), 1000-7.
  7. Barber MF, Kronenberg Z, Yandell M, Elde NC (2016). Antimicrobial Functions of Lactoferrin Promote Genetic Conflicts in Ancient Primates and Modern Humans. PLoS Genet, 12(5), e1006063.
  8. Campbell M, Oakeson KF, Yandell M, Halpert JR, Dearing D (2016). The draft genome sequence and annotation of the desert woodrat Neotoma lepida. Genomics Data, 9, 58-9.
  9. Safavi-Hemami H, Lu A, Li Q, Fedosov AE, Biggs J, Showers Corneli P, Seger J, Yandell M, Olivera BM (2016). Venom Insulins of Cone Snails Diversify Rapidly and Track Prey Taxa. Mol Biol Evol, 33(11), 2924-2934.
  10. Flygare S, Simmon K, Miller C, Qiao Y, Kennedy B, Di Sera T, Graf EH, Tardif KD, Kapusta A, Rynearson S, Stockmann C, Queen K, Tong S, Voelkerding KV, Blaschke A, Byington CL, Jain S, Pavia A, Ampofo K, Eilbeck K, Gabor Marth G, Yandell M, Schlaberg R (05/26/2016). Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA profiling. Genome Biol, 17(1), 111.
  11. Mason CC, Khorashad JS, Tantravahi SK, Kelley TW, Zabriskie MS, Yan D, Pomicter AD, Reynolds KR, Eiring AM, Kronenberg Z, Sherman RL, Tyner JW, Dalley BK, Dao KH, Yandell M, Druker BJ, Gotlib J, OHare T, Deininger MW (2016). Age-related mutations and chronic myelomonocytic leukemia. Leukemia, 30(4), 906-13.
  12. Manuck TA, Watkins S, Eplin MS, Parry S, Zhang H, Huang H, Biggio JR, Bukowski R, Saade G, Andrews W, Baldwin D, Sadovsky Y, Reddy U, Ilekis J, Varner MW, Jorde LJ, Yandell M (01/01/2016). Gene set enrichment investigation of maternal exome variation in spontaneous preterm birth (SPTB). Am J Obstet Gynecol, 241(1), S142-S143.
  13. Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Caestro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandell M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alfldi J, Lindblad-Toh K, Postlethwait JH (4/2016). The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat Genet, 48(4), 427-37.
  14. Safavi-Hemami H, Li Q, Jackson RL, Song AS, Boomsma W, Bandyopadhyay PK, Gruber CW, Purcell AW, Yandell M, Olivera BM, Ellgaard L (3/2016). Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides. Proc Natl Acad Sci U S A, 113(12), 3227-32.
  15. Domyan ET, Kronenberg Z, Infante CR, Vickrey AI, Stringham SA, Bruders R, Guernsey MW, Park S, Payne J, Beckstead RB, Kardon G, Menke DB, Yandell M, Shapiro MD (03/15/2016). Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species. eLife, e12115.