School of Medicine

Biomedical Informatics News

Publications

  • R Gouripeddi, J Facelli, K Sward, for the Utah PRISMS Team (Submitted). The Utah PRISMS Infrastructure for Generating Air Quality Exposomes, [Abstract]. Air Quality: Science for Solutions.
  • Jingran Wen, Ramkiran Gouripeddi, Julio C Facelli (Submitted). A Machine Learning Approach for Data Source and Type Identification to Support Metadata Discovery of Heterogeneous Data [Abstract]. 2017 Joint Summits on Translational Science.
  • Jianyin Shao, Ramkiran Gouripeddi, Julio C Facelli (Submitted). Towards a Distributional Semantics Approach for Enhancing Clinical Trial Recruitment [Abstract]. 2017 Joint Summits on Translational Science.
  • Ramkiran Gouripeddi, Phillip B Warner, Peter Mo, Dustin Schultz, Emerson Borsato, Scott P Narus, Jeff Duncan and Julio C Facelli (Submitted). VIRGO: Virtual Identity Resolution on the Go. Journal of Healthcare Informatics Research.
  • Bradshaw RL, Gouripeddi R, Facelli JF (Submitted). Concept Bag: A new Method for Computing Concept Similarity. Journal of Biomedical Semantics.
  • Rajan NS, Gouripeddi R, Mo PWK, Madsen RK, Facelli JC (In Press). Towards a Content Agnostic Computable Knowledge Repository for Characterization of Health Data. ACM Journal of Data and Information Quality.
  • Bryan Stone, Gabrielle Hester, Daniel Jackson, Troy Richardson, Matt Hall, Ramkiran Gouripeddi, Ryan Butcher, Ron Keren, Rajendu Srivastava (Submitted). Fundoplication or Gastrojejunal Feeding for Refractory Gastroesophageal Reflux in Children with Neurologic Impairment: a Comparative Effectiveness PHIS+ Study. JAMA Pediatr.
  • Jianyin Shao, Ramkiran Gouripeddi, Julio C Facelli (Submitted). Improving Recruitment by Semantic Matching of Clinical Trail Criteria with Patient Data from EHR [Abstract]. 2016 National Library of Medicine Training Conference.
  • Stphane M Meystre, Ramkiran Gouripeddi, Joel S Tieder, Jeffrey M Simmons, Rajendu Srivastava, Samir S Shah, on behalf of the Pediatric Research in Inpatient Settings (Submitted). Enhancing Comparative Effectiveness Research with Automated Pediatric Pneumonia Detection in a Multi-Institutional Clinical Repository: A PHIS+ Study. J Med Internet Res.
  • Sarah McBride, Cary Thurm, Ramkiran Gouripeddi, Bryan Stone, Phil Jaggard, Samir Shah, Joel Tieder, Ryan Butcher, Jason Weiser, Matt Hall, Ron Keren, Chris Landrigans (Submitted). Empiric Antibiotics for Acute Hematogenous Osteomyelitis in the Era of MRSA. Pediatrics.
  • A Lund, N Burnett, R Gouripeddi, J Facelli (Submitted). An agent-based model for estimating human activity patterns on the Wasatch Front [Abstract]. Air Quality: Science for Solutions.
  • Nicole Burnett, Peter Mo, Jingran Wen, Randy Madsen, Ram Gouripeddi, Julio C Facelli (2/17/2017). Harmonization of Sensor Measurements to Support Health Research [Abstract]. Utah Conference on Undergraduate Research, Utah Valley University, February 17, 2017.
  • Bryan Stone, Gabrielle Hester, Daniel Jackson, Troy Richardson, Matt Hall, Ramkiran Gouripeddi, Ryan Butcher, Ron Keren, Rajendu Srivastava (02/01/2017). Effectiveness of Fundoplication or Gastrojejunal Feeding in Children with Neurologic Impairment. Hospital Pediatrics.
  • Nicole Burnett, Ram Gouripeddi (01/24/2017). Enabling an Air Quality Exposome for Salt Lake Citizens [Abstract]. Research on Capitol Hill 2017, Utah State Capitol, Salt Lake City, January 24, 2017.
  • Jean Fredo Louis, Ram Gouripeddi (01/19/2017). Towards a Framework for Global Health Information Translation [Abstract]. Extreme Affordability: Disrupting Barriers to Strengthen Global Health, Salt Lake City, Utah, January 19-21, 2017.
  • Ram Gouripeddi (01/19/2017). Making the Case for Informatics in Global Health [Abstract]. Extreme Affordability: Disrupting Barriers to Strengthen Global Health, Salt Lake City, Utah, January 19-21, 2017.
  • EM Gilbert J Nativi-Nicolau, A Healy, AbdelRahman SE, J Jaramillo, A Elmer, S Tagge, S McKellar, J Stehlik, S Drakos, J Fang (2016). Readmission Rates in Patients with Left Ventricular Assist Devices [Abstract]. The Journal of Heart and Lung Transplantation.
  • Soowhan Lah, AbdelRahman SE, Kensaku Kawamoto (2015). Predicting Costs In Pneumonia: A Bayesian Network Analysis [Abstract]. A47 CLINICAL ASPECTS AND DIAGNOSIS OF RESPIRATORY TRACT INFECTIONS.
  • Sumithra Velupillai, Danielle L Mowery, AbdelRahman SE, Lee Christensen, Wendy Chapman (2015). Towards a Generalizable Time Expression Model for Temporal Reasoning in Clinical Notes. AMIA Conference.
  • AbdelRahman SE, Kensaku Kawamoto (2015). Design, Development, and Initial Application of a Systematic, Semi-Automated Predictive Analytics Framework. Poster session presented at AMIA 2015, Washington DC.
  • Sumithra Velupillai, Danielle L Mowery, AbdelRahman SE, Lee Christensen, Wendy W Chapman (2015). BluLab: Temporal Information Extraction for the 2015 Clinical TempEval Challenge (1st Rank). the 2015 Clinical TempEval Challenge.
  • Amr M Sayed, AbdelRahman SE, Reem Bahgat, Aly Fahmy (2016). Time Emotional Analysis of Arabic Tweets at Multiple Levels. International Journal of Advanced Computer Science and Applications, 7(10), 336-324.
  • Morid, MA, Sheng, ORL, AbdelRahman SE (2016). Leveraging Patient Similarity and Time Series Data in Healthcare Predictive Models. In Proc. of 7th Annual Workshop on Health IT and Economics (WHITE) (Eds.). Washington, DC.
  • Morid, MA, Sheng, ORL, AbdelRahman SE (2016). PPMF: A Patient-based Predictive Modeling Framework for Early ICU Mortality Prediction. Healthcare Analytics and Medical Decision Making, INFORMS Workshop. Nashville, Tennessee.
  • AbdelRahman SE, Bray B (2016). Frequency Tree Clustering for ICU Mortality Analytics using Graph Database: Circulatory System Diseases Case Study. The IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2016, College of Computing & Informatics.
  • Morid, MA, Sheng, ORL, AbdelRahman SE (2016). Healthcare Predictive Analytics for Patient Time Series with Non-ignorable Missingness: The Case of Early ICU Mortality Prediction (Best Paper Award). In Proc. of 11th Data Mining & Decision Analytics (DMDA), INFORMS Workshop. Nashville, Tennessee.
  • Eman Negm, AbdelRahman SE, Reem Bahgat (2017). PREFCA: A portal retrieval engine based on formal concept analysis. Information Processing & Management, 53(1), 203-222.
  • Mollie Cummins, Naresh Sundar Rajan, Chad Hodge, Ramkiran Gouripeddi (11/29/2016). Patterns and perceptions of asynchronous video discussion in a graduate informatics course. J Nurs Educ, 55(12), 706-710.
  • Ramkiran Gouripeddi, Peter Mo, Randy Madsen, Phillip Warner, Ryan Butcher, Jingran Wen, Jianyin Shao, Nicole Burnett, Naresh Sundar Rajan, Bernie LaSalle, Julio C Facelli (11/28/2016). A Framework for Metadata Management and Automated Discovery for Heterogeneous Data Integration [Abstract]. 2016 BD2K All Hands Meeting, Bethesda, MD, November 29-30, 2016.
  • Jingran Wen, Ramkiran Gouripeddi, Julio C Facelli (11/28/2016). A Machine Learning Approach for Data Source and Type Identification to Support Metadata Discovery [Abstract]. 2016 BD2K All Hands Meeting, Bethesda, MD, November 29-30, 2016.
  • R Gouripeddi, K Eilbeck, M Cummins, K Sward, B LaSalle, K Peterson, R Madsen, P Warner, W Dere, JC Facelli (10/14/2016). A Conceptual Architecture for Reproducible On-demand Data Integration for Complex Diseases, [Abstract]. Research Reproducibility Conference, Salt Lake City.
  • J Wen, P Mo, R Madsen, R Butcher, P Warner, R Gouripeddi, JC Facelli (10/14/2016). Metadata Discovery and Integration to Support Reproducible Research using the OpenFurther Platform [Abstract].
  • R Gouripeddi, K Eilbeck, M Cummins, K Sward, B LaSalle, K Peterson, R Madsen, P Warner, W Dere, JC Facelli (10/14/2016). A Conceptual Architecture for Reproducible On-demand Data Integration for Complex Diseases, [Abstract]. Research Reproducibility Conference, Salt Lake City.
  • R Gouripeddi, MR Cummins, R Madsen, B LaSalle, A Redd, X Ye, A Presson, T Greene, J Facelli (10/14/2016). Streamlining Study Design and Statistical Analysis [Abstract]. Research Reproducibility Conference, Salt Lake City.
  • R Gouripeddi, P Warner, R Madsen, P Mo, N Burnett, J Wen, A Lund, R Butcher, M Cummins, J Facelli, K Sward (10/14/2016). An Infrastructure for Reproducible Exposomic Research [Abstract]. Research Reproducibility Conference, Salt Lake City.
  • R Butcher, R Gouripeddi, R Madsen, P Mo, B LaSalle (10/14/2016). Research Data Service [Abstract]. Research Reproducibility Conference, Salt Lake City.
  • J Shao, R Gouripeddi, JC Facelli (10/14/2016). Improving Clinical Trial Cohort Definition and Enrollment with Distributional Semantic Matching [Abstract]. Research Reproducibility Conference, Salt Lake City.
  • MR Cummins, R Gouripeddi, J Facelli (10/14/2016). A low-cost, low-barrier clinical trials registry to support effective recruitment [Abstract]. Research Reproducibility Conference, Salt Lake City.
  • NS Rajan, R Gouripeddi, JC Facelli (10/12/2016). Measuring Validity of Phenotyping Algorithms across Disparate Data using a Data Quality Assessment Framework. 3rd Workshop on Data Mining for Medical Informatics: Learning Health, Chicago, IL.
  • Xiaorui Chen, Maureen A Murtaugh, Corinna Koebnick, Srinivasan Beddhu, Jennifer H Garvin, Mike Conway, Younghee Lee, Ramkiran Gouripeddi, Gang Luo (11/05/2016). Dietary Management Software for Chronic Kidney Disease: Current Status and Open Issues.
  • Rima Habre, Jose-Luis Ambite, Alex Bui, Mollie Cummins, Michael Dellarco, Sandrah Eckel, Ram Gouripeddi, Kathy Sward (10/09/2016). Pediatric Research Using Integrated Sensor Monitoring Systems, Data Modeling Working Group [Abstract]. 2016 International Society of Exposure Science Annual Meeting, Utrecht, The Netherlands.
  • Ramkiran Gouripeddi, Ryan Butcher, Peter Mo, Randy Madsen, Phillip Warner, Naresh Rajan, Bernie LaSalle, Julio Facelli (10/01/2016). Evaluation of DIADS for Quality Measure Reporting. Utah Department of Health.
  • Ramkiran Gouripeddi, Ryan Butcher, Peter Mo, Randy Madsen, Phillip Warner, Naresh Rajan, Bernie LaSalle, Julio Facelli (10/01/2016). A Proof-of-Concept Federation of UDOH Data Resources using OpenFurther. Utah Department of Health.
  • Cook DA, Teixeira MT, Heale BS, Cimino JJ, Del Fiol G (2016). Context-sensitive decision support (infobuttons) in electronic health records: a systematic review.LID - ocw104 [pii]LID - 10.1093/jamia/ocw104 [doi]. (Epub ahead of print) J Am Med Inform Assoc.
  • Colicchio TK, Facelli JC, Fiol GD, Scammon DL, Bowes WA 3rd, Narus SP (2016). Health Information Technology Adoption: Understanding Research Protocols and Outcome Measurements for IT Interventions in Health Care.LID - S1532-0464(16)30072-7 [pii]LID - 10.1016/j.jbi.2016.07.018 [doi]. (Epub ahead of print) J Biomed Inform.
  • Meystre SM, Kim Y, Gobbel GT, Matheney ME, Redd A, Bray BE, Garvin JH (2016). Congestive heart failure information extraction framework for automated treatment performance measures assessment. J Am Med Inform Assoc.
  • Meystre SM, Kim Y, Gobbel GT, Matheny ME, Redd A, Bray BE, Garvin JH (2016). Congestive heart failure information extraction framework for automated treatment performance measures assessment.LID - ocw097 [pii]LID - 10.1093/jamia/ocw097 [doi]. (Epub ahead of print) J Am Med Inform Assoc.
  • Hall JL, Ryan JJ, Bray BE, Brown C, Lanfear D, Newby LK, Relling MV, Risch NJ, Roden DM, Shaw SY, Tcheng JE, Tenenbaum J, Wang TN, Weintraub WS (2016). Merging Electronic Health Record Data and Genomics for Cardiovascular Research: A Science Advisory From the American Heart Association. Circ Cardiovasc Genet, 9(2), 193-202.
  • Morid MA, Fiszman M, Raja K, Jonnalagadda SR, Del Fiol G (2016). Classification of clinically useful sentences in clinical evidence resources. J Biomed Inform, 60, 14-22.
  • Luo G, Frey LJ (2016). Efficient Execution Methods of Pivoting for Bulk Extraction of Entity-Attribute-Value-Modeled Data. IEEE J Biomed Health Inform, 20(2), 644-654.