School of Medicine

Biomedical Informatics News

Publications

  • Jingran Wen, Ramkiran Gouripeddi, Julio C Facelli (Submitted). A Machine Learning Approach for Data Source and Type Identification to Support Metadata Discovery of Heterogeneous Data [Abstract]. 2017 Joint Summits on Translational Science.
  • Rajan NS, Gouripeddi R, Mo PWK, Madsen RK, Facelli JC (Submitted). Towards a Content Agnostic Computable Knowledge Repository for Characterization of Health Data. Comput Methods Programs Biomed.
  • DM Hedges, G Duffley, R Gouripeddi, C Butson (Submitted). The International Neuromodulation Registry: A Graph Database Representation of Patient-Specific Data in Concert with Predictive Modeling for Neuromodulation Therapies [Abstract]. Society of Neuroscience 2018, November 3-7, San Diego, CA.
  • Jianyin Shao, Ramkiran Gouripeddi, Julio C Facelli (Submitted). Towards a Distributional Semantics Approach for Enhancing Clinical Trial Recruitment [Abstract]. 2017 Joint Summits on Translational Science.
  • Julio Facelli, Alex Bui, Albert Lund, Ram Gouripeddi, Mollie Cummins, Katherine Sward, Scott Collingwood, Rima Habre (Submitted). Using the NIH PRISMS Infrastructure to Perform Novel Sensor-Based Environmental Health Studies of Pediatric Asthma [Abstract]. , ISES-ISEE 2018 Joint Annual Meeting, 2018, 26-30 August, Ottawa, Canada.
  • Jason Miller, Manu Shivakumar, Younghee Lee, Kwangsik Nho and Dokyoon Kim (In Press). Rare variants in the Splicing Regulatory Elements of EXOC3L4 are associated with brain glucose metabolism in Alzheimer’s disease. BMC Bioinformatics.
  • R Gouripeddi, R Madsen, P Mo, P Warner, L Tran, N Burnett, R Butcher, A Lund, S An, M Cummins, K Sward, J Facelli (Submitted). An Architecture for Metadata-driven Integration of Heterogeneous Sensor and Health Data for Translational Exposomic Research. 2018 IEEE International Conference on Biomedical and Health Informatics, Las Vegas, NV, USA.
  • Ramkiran Gouripeddi, Phillip B Warner, Peter Mo, Dustin Schultz, Emerson Borsato, Scott P Narus, Jeff Duncan and Julio C Facelli (Submitted). VIRGO: Virtual Identity Resolution on the Go. Journal of Healthcare Informatics Research.
  • Burnett N, Gouripeddi R (Submitted). Representing the Molecular Basis of Translational Exposomic Research. Journal Not Yet Confirmed.
  • Del Fiol G, Michelson M, Iorio A, Cotoi C, Haynes RB (2018). A Deep Learning Method to Automatically Identify Reports of Scientifically Rigorous Clinical Research from the Biomedical Literature: Comparative Analytic Study. J Med Internet Res, 20(6), e10281.
  • Bian J, Weir C, Unni P, Borbolla D, Reese T, Wan YJ, Del Fiol G (2018). Interactive Visual Displays for Interpreting the Results of Clinical Trials: Formative Evaluation With Case Vignettes. J Med Internet Res, 20(6), e10507.
  • D Groat, R Gouripeddi, Y Lin, W Dere, M Murray, P Gesteland, J Facelli (06/15/2018). Identification of High-Level Formalisms that Support Translational Research Reproducibility [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • J Shao, R Gouripeddi, J Facelli (06/15/2018). Improving Clinical Trial Research Reproducibility using Reproducible Informatics Methods [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • R Gouripeddi, D Chang, M Cummins, J Facelli, K Sward (06/06/2018). An Environmental Scan of Global Air Quality Research for Developing Global Exposomic Informatics Infrastructure [Abstract]. Global Environmental Health Day 2018, Research Triangle, NC, USA.
  • Basma Hassan, AbdelRahman SE, Reem Bahgat (2015). FCICU: The Integration between Sense-Based Kernel and Surface-Based Methods to Measure Semantic Textual Similarity. Proceedings of the 9th International Workshop on Semantic Evaluation (SemEval 2015) (pp. 154-158).
  • AbdelRahman SE, Basma Hassan, Reem Bahgat (2010/10). A New Email Retrieval Ranking Approach. Int J Comput Sci Inf Technol, 2(5), 44-63.
  • Sara Salim, AbdelRahman SE (2010). A multiple-domain ontology builder. In Association for Computational Linguistics. (Ed.), COLING '10 Proceedings of the 23rd International Conference on Computational Linguistics, 967-975.
  • Basma Hassan, AbdelRahman SE, Reem Bahgat, Ibrahim Farag (2017). FCICU at SemEval-2017 Task 1: Sense-based language independent semantic textual similarity approach. Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017) (Ed.), (pp. 125-129).
  • N Burnett, R Gouripeddi (06/01/2018). Representing the Molecular Basis of Exposomic Research. Univ Utah's J Undergrad Res, 2018.
  • Mahmoud A Mahdi, AbdelRahman SE, and Reem Bahgat (2018). A High-Performing Similarity Measure for Categorical Dataset with SF-Tree Clustering Algorithm. Int J Adv Comput Sci Appl, 9(5), 496-509.
  • N Burnett, R Gouripeddi (06/01/2018). Development of a Sensor Metadata Library for Exposomic Studies. Univ Utah's J Undergrad Res, 2018.
  • Colicchio TK, Del Fiol G, Scammon DL, Facelli JC, Bowes WA 3rd, Narus SP (2018). Comprehensive Methodology to Monitor Longitudinal Change Patterns during EHR Implementations: a Case Study at a Large Health Care Delivery Network.LID - S1532-0464(18)30105-9 [pii]LID - 10.1016/j.jbi.2018.05.018 [doi]. (Epub ahead of print) J Biomed Inform.
  • Janette Vazquez, AbdelRahman SE, Loretta Byrne, Michael Russell, Paul Harris, and Julio Facelli (2018). Data Mining of a De-Identified Version of ResearchMatch to Estimate Likelihood of Participating inClinical Research [Abstract]. Society for Advancing of Chicanos/Hispanics and Native Americans in Science (SACNAS).
  • Younghee Lee, Seonggyun Han, Dongwook Kim, Dokyoon Kim, EmrinHorgousluoglu, Shannon L Risacher, Andrew J Saykin, and Kwangsik Nho (2018). Genetic variation affecting exon skipping contributes to brain structural atrophy in Alzheimer’s disease. AMIA Jt Summits Transl Sci Proc.
  • A Lund, D Groat, R Gouripeddi, J Facelli, K Sward (05/11/2018). Using the Utah PRISMS Informatics Ecosystem to Bridge Gaps Between Exposomic and Immunological Research [Abstract]. III Initiative Spring 2018 Symposium, Salt Lake City, UT, USA.
  • R Gouripeddi, D Groat, A Lund, A Miller, K Sward, J Facelli (06/15/2018). Performing Reproducible Translational Research by Integrating Immunomes and Exposomes [Abstract]. Research Reproducibility, Salt Lake City, UT, USA.
  • S Collingwood, R Gouripeddi, B Wong K Sward (08/26/2018). Environmental influences on health outcomes—integrating real-time exposure measures from homes into longitudinal cohort studies: Lessons from the field [Abstract]. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018), August 26 - 30, Ottawa, Canada.
  • R Gouripeddi, M Cummins, B LaSalle, K Sward, W Dere, J Faceli (06/15/2018). Towards Reproducible Translational Research using Templates [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • R Gouripeddi, D Groat, A Lund, A Miller, K Sward, J Faceli (06/15/2018). Performing Reproducible Translational Research by Integrating Immunomes and Exposomes [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • R Gouripeddi, A Lund, N Burnett, L Tran, P Mo, R Madsen, M Cummins, K Sward, J Faceli (06/15/2018). Enabling Reproducible Computational Modeling: The Utah PRISMS Ecosystem [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • R Gouripeddi, R Madsen, L Tran, P Mo, N Burnett, R Butcher, M Cummins, K Sward, J Faceli (05/02/2018). Generating Consistent Spatio-temporal Events of Exposure for Translational Exposomic Research [Abstract]. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018), August 26 - 30, Ottawa, Canada.
  • V Tiase, R Gouripeddi, K Sward, N Burnett, R Butcher, P Mo, M Cummins (05/02/2018). Advancing Study Metadata Models to Support an Exposomic Informatics Infrastructure [Abstract]. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018), August 26 - 30, Ottawa, Canada.
  • N Burnett, R Gouripeddi, P Mo, R Madsen, R Butcher, K Sward, J Faceli (05/02/2018). Development of a Sensor Metadata Library for Exposomic Studies [Abstract]. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018), August 26 - 30, Ottawa, Canada.
  • Diane M Walker, AbdelRahman SE, Julio C Facelli (2018). Automatic Knowledge Discovery in the National Health and Nutrition Examination Survey [Abstract]. Association for Clinical and Translational Science.
  • Seonggyun Han, Dongwook Kim, Youngjun Kim, Kanghoon Choi, Jason Miller, DokyoonKim, and Younghee Lee (2018). CAS-viewer: Web-based tool for splicing-guided integrative analysis of multi-omics cancer data. BMC Bioinformatics.
  • D Groat, R Gouripeddi, Y Lin, W Dere, and J Facelli (04/19/2018). Developing an Informatics Framework to Conduct Translational Research of Complex Diseases [Abstract]. Translational Science 2018, Washington, DC, USA, 2018.
  • Burnett N, Gouripeddi R, Cummins M, Facelli J, Sward K (03/14/2018). Towards a Molecular Basis of Exposomic Research [Abstract]. AMIA 2018 Informatics Summit.
  • Hodge CM, Narus SP (2018). Electronic problem lists: a thematic analysis of a systematic literature review to identify aspects critical to success.LID - 10.1093/jamia/ocy011 [doi]. (Epub ahead of print) J Am Med Inform Assoc.
  • Ram Gouripeddi, Peter Mo, Linda Edelman, Mollie Cummins (04/19/2018). Graphical Methods for Discovering Opioid Misuse Trajectories [Abstract]. Translational Science 2018, Washington, D.C.
  • Samir Abdelrahman, Ram Gouripeddi, Jianyin Shao, Ryan Butcher, Janette Vasquez, Bernie LaSalle, Julio Facelli (04/19/2018). Temporal Characterization of Clinical Trial Descriptions [Abstract]. Translational Science 2018.
  • Ram Gouripeddi, Rishi Deka, Thomas Reese, Ryan Butcher, Bradley Martin, Jeff Talbert, Bernie LaSalle, Julio Facelli, Diana Brixner (04/19/2018). Reproducibility of Electronic Health Record Research Data Requests [Abstract]. Translational Science 2018, April 19-21, Washington, D.C.
  • D Groat, R Gouripeddi, W Dere, J Facelli (05/08/2018). Development of a Framework for Scalable On-demand Data Integration for Complex Diseases [Abstract]. AMIA 2018 Clinical Informatics Conference, May 08 - 10, 2018 Scottsdale, AZ.
  • S An, A Lund, N Burnett, L Tran, P Mo, R Madsen, K Sward, R Gouripeddi, J Facelli (01/19/2018). Utah PRISMS Ecosystem: An Infrastructure for Personal Exposomic Research. Ygnite 2018, Washington DC.
  • Dongwook Kim, Mr Manu Shivakumar, Seonggyun Han, Dr Michael S Sinclair, Youngji Lee, Dr Yonglan Zheng, Dr Olufunmilayo I Olopade, Dokyoon Kim, and Younghee Lee (2018). Population-dependent intron retention and DNA methylation in breast cancer. Mol Cancer Res.
  • Sarah McBride, Cary Thurm, Ramkiran Gouripeddi, Bryan Stone, Phil Jaggard, Samir Shah, Joel Tieder, Ryan Butcher, Jason Weiser, Matt Hall, Ron Keren, Chris Landrigans (01/08/2018). Comparison of Empiric Antibiotics for Acute Osteomyelitis in Children. Hospital Pediatrics.
  • Seonggyun Han, Dongwook Kim, Manu K Shivakumar, Young-Ji Lee, Tullika Garg, Jason J Miller, Juhan Kim, Dokyoon Kim, and Younghee Lee (2018). The effects of alternative splicing on miRNA binding sites in bladder cancer. PLoS ONE.
  • R Gouripeddi, N Rajan, J Facelli (01/03/2018). A Service Oriented Architecture for Assessing Quality of Heterogeneous Health Data,. Methods for Examining Data Quality in Healthcare Integrated Data Repositories, Pacific Symposium on Biocomputing (PSB) 2018, January 3-7, 2018 The Big Island of Hawaii.
  • Mohammad Amin Morid, Kensaku Kawamoto, Travis Ault, Josette Dorius, AbdelRahman SE (2017). Supervised Learning Methods for Predicting Healthcare Costs: Systematic Literature Review and Empirical Evaluation. AMIA 2017.
  • Ramkiran Gouripeddi, Nicole Burnett, Mollie Cummins, Julio Facelli, Katherine Sward (11/04/2017). A Conceptual Representation of Exposome in Translational Research [Abstract]. AMIA 2017 Annual Symposium.
  • Huser V, Kahn, MG, Brown JS, Gouripeddi R (1/4/2017). Methods for examining data quality in healthcare integrated data repositories. Pacific Symposium on Biocomputing (PSB) 2018, The Big Island of Hawaii, 628–633.