School of Medicine

Biomedical Informatics News

Publications

  • DM Hedges, G Duffley, R Gouripeddi, C Butson (). The International Neuromodulation Registry: A Graph Database Representation of Patient-Specific Data in Concert with Predictive Modeling for Neuromodulation Therapies [Abstract]. Society of Neuroscience 2018, November 3-7, San Diego, CA.
  • M Karsy, M Azab, J Harper, H Abou-Al-Shaar, J Guan, I Eli, A Brock, R Gouripeddi, R Butcher, C Cole, S Menacho, W Couldwell (). Evaluation of a D-dimer Protocol for Detection of Deep Vein Thrombosis [Abstract]. 2019 AANS Annual Scientific Meeting, San Diego, April 13 - 17, 2019.
  • Jason Miller, Manu Shivakumar, Younghee Lee, Kwangsik Nho and Dokyoon Kim (). Rare variants in the Splicing Regulatory Elements of EXOC3L4 are associated with brain glucose metabolism in Alzheimer’s disease. BMC Bioinformatics.
  • Colicchio TK, Cimino JJ, Del Fiol G (2019). Unintended Consequences of Nationwide Electronic Health Record Adoption: Challenges and Opportunities in the Post-Meaningful Use Era. J Med Internet Res, 21(6), e13313.
  • Rajan NS, Gouripeddi R, Mo PWK, Madsen RK, Facelli JC ().

    Towards a Content Agnostic Computable Knowledge Repository for Characterization of Health Data

    . Comput Methods Programs Biomed, Volume 177(August 2019), 193-201.
  • R Gouripeddi, M Cummins, J Facelli, K Sward ().

    The Utah PRISMS Informatics Ecosystem: An Infrastructure for Translational Reproductive Health Research

    [Abstract].
  • Aakre CA, Maggio LA, Fiol GD, Cook DA (2019). Barriers and facilitators to clinical information seeking: a systematic review. (Epub ahead of print) J Am Med Inform Assoc.
  • R Gouripeddi, L Tran, R Madsen, T Gangadhar, P Mo, P Warner, N Burnett, R Butcher, K Sward, J Facelli (). An Architecture for Metadata-driven Integration of Heterogeneous Sensor and Health Data for Translational Exposomic Research. 2019 IEEE International Conference on Biomedical and Health Informatics, Chicago, IL, USA: IEEE.
  • M Mehta, D Groat, Y Lin, R Gouripeddi, Julio Facelli (). Classifying Impaired Awareness of Hypoglycemia with Convolutional Neural Networks. 2019 IEEE International Conference on Biomedical and Health Informatics, Chicago, IL, USA.
  • R Bradshaw, R Gouripeddi, J Facelli (). Concept Bag: A New Method for Computing Concept Similarity in Biomedical Data. Lect Notes Comput Sc, 2019(Bioinforma), 15–23.
  • Colicchio TK, Borbolla D, Colicchio VD, Scammon DL, Del Fiol G, Facelli JC, Bowes WA 3rd, Narus SP (2019). Looking Behind the Curtain: Identifying Factors Contributing to Changes on Care Outcomes During a Large Commercial EHR Implementation. EGEMS (Wash DC), 7(1), 21.
  • Bian J, Abdelrahman SE, Shi J, Del Fiol G (). Automatic identification of recent high impact clinical articles in PubMed to support clinical decision making using time-agnostic features. J Biomed Inform, Volume 89, 1-10.
  • Morid MA, Sheng ORL, Kawamoto K, Ault T, Dorius J, Abdelrahman SE (). Healthcare Cost Prediction: Leveraging Fine-grain Temporal Patterns. J Biomed Inform, Volume 91, 103113-103123.
  • R Gouripeddi, D Groat, S Abdelrahman, T Cheatham, M Cummins, K Eilbeck, B LaSalle, K Sward, J Facelli (). Development of a Competency-based Informatics Course for Translational Researchers [Abstract]. Translational Science 2019, Washington DC.
  • D Goat, R Gouripeddi, YK Lin, J Facelli (). Measuring the Autonomic Nervous System for Translational Research: Identification of Non-invasive Methods [Abstract]. Translational Science 2019, Washington DC.
  • R Gouripeddi, A Miller, K Sward, J Facelli (). Systematically Integrating Microbiomes and Exposomes for Translational Research [Abstract]. Translational Science 2019, Washington DC.
  • T Morgan, R Gouripeddi, K Sward (). Characterizing Metadata of e-Devices for Interventional Translational Research. AMIA 2019 Informatics Summit, San Fransisco, CA, USA, 2019.
  • R Gouripeddi, L Tran, A Lund, R Madsen, J Facelli, K Sward, Systems Demonstration (). The Utah PRISMS Informatics Ecosystem: An Infrastructure for Generating and Utilizing Exposomes for Translational Research. AMIA 2019 Informatics Summit, San Fransisco, CA, USA., 2019.
  • S Meystre, R Gouripeddi (). Clinical Research in the Postgenomic Era. In R. Richesson, J. Andrews (Eds.), Clinical Research Informatics (2nd). Springer International Publishing, 2019.
  • D Groat, YK Lin, R Gouripeddi, J Facelli (). Assimilation of Patient Reported Data and Device Recorded Data for Determining Impaired Awareness of Hypoglycemia [Abstract]. 2018 Diabetes and Metabolism Research Center and Driving Out Diabetes Initiative Fall Retreat, Salt Lake City, UT, USA.
  • Ram Gouripeddi, Scott Collingwood, Bob Wong, Mollie Cummins, Julio Facelli, Katherine Sward (). The Utah PRISMS Informatics Ecosystem: An Infrastructure for Generating and Utilizing Exposomes for Translational Research [Abstract]. Total Exposure Health Conference 2018, Bethesda, 6-7 September, 2018.
  • Colicchio TK, Del Fiol G, Scammon DL, Facelli JC, Bowes WA 3rd, Narus SP (2018 Jul). Comprehensive methodology to monitor longitudinal change patterns during EHR implementations: a case study at a large health care delivery network. J Biomed Inform, 83, 40-53.
  • Colicchio TK, Del Fiol G, Scammon DL, Facelli JC, Bowes WA 3rd, Narus SP (2018 Jul). Comprehensive methodology to monitor longitudinal change patterns during EHR implementations: a case study at a large health care delivery network. J Biomed Inform, 83, 40-53.
  • Bian J, Weir C, Unni P, Borbolla D, Reese T, Wan YJ, Del Fiol G (2018 Jun 25). Interactive Visual Displays for Interpreting the Results of Clinical Trials: Formative Evaluation With Case Vignettes. J Med Internet Res, 20(6), e10507.
  • Del Fiol G, Michelson M, Iorio A, Cotoi C, Haynes RB (2018 Jun 25). A Deep Learning Method to Automatically Identify Reports of Scientifically Rigorous Clinical Research from the Biomedical Literature: Comparative Analytic Study. J Med Internet Res, 20(6), e10281.
  • D Groat, R Gouripeddi, Y Lin, W Dere, M Murray, P Gesteland, J Facelli (). Identification of High-Level Formalisms that Support Translational Research Reproducibility [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • J Shao, R Gouripeddi, J Facelli (). Improving Clinical Trial Research Reproducibility using Reproducible Informatics Methods [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • Grillo DA, Albano JMR, Mocskos EE, Facelli JC, Pickholz M, Ferraro MB (2018 Jun 7). Mechanical properties of drug loaded diblock copolymer bilayers: A molecular dynamics study. J Chem Phys, 148(21), 214901.
  • R Gouripeddi, D Chang, M Cummins, J Facelli, K Sward (). An Environmental Scan of Global Air Quality Research for Developing Global Exposomic Informatics Infrastructure [Abstract]. Global Environmental Health Day 2018, Research Triangle, NC, USA.
  • AbdelRahman SE, Basma Hassan, Reem Bahgat (). A New Email Retrieval Ranking Approach. Int J Comput Sci Inf Technol, 2(5), 44-63.
  • Sara Salim, AbdelRahman SE (). A multiple-domain ontology builder. In Association for Computational Linguistics. (Ed.), COLING '10 Proceedings of the 23rd International Conference on Computational Linguistics, 967-975.
  • Basma Hassan, AbdelRahman SE, Reem Bahgat, Ibrahim Farag (). FCICU at SemEval-2017 Task 1: Sense-based language independent semantic textual similarity approach. Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017) (Ed.), (pp. 125-129).
  • Basma Hassan, AbdelRahman SE, Reem Bahgat (). FCICU: The Integration between Sense-Based Kernel and Surface-Based Methods to Measure Semantic Textual Similarity. Proceedings of the 9th International Workshop on Semantic Evaluation (SemEval 2015) (pp. 154-158).
  • N Burnett, R Gouripeddi (). Development of a Sensor Metadata Library for Exposomic Studies. Univ Utah's J Undergrad Res, 2018.
  • Mahmoud A Mahdi, AbdelRahman SE, and Reem Bahgat (). A High-Performing Similarity Measure for Categorical Dataset with SF-Tree Clustering Algorithm. Int J Adv Comput Sci Appl, 9(5), 496-509.
  • N Burnett, R Gouripeddi (). Representing the Molecular Basis of Exposomic Research. Univ Utah's J Undergrad Res, 2018.
  • Colicchio TK, Del Fiol G, Scammon DL, Facelli JC, Bowes WA 3rd, Narus SP (2018 May 29). Comprehensive Methodology to Monitor Longitudinal Change Patterns during EHR Implementations: a Case Study at a Large Health Care Delivery Network.LID - S1532-0464(18)30105-9 [pii]LID - 10.1016/j.jbi.2018.05.018 [doi]. (Epub ahead of print) J Biomed Inform.
  • Janette Vazquez, AbdelRahman SE, Loretta Byrne, Michael Russell, Paul Harris, and Julio Facelli (). Data Mining of a De-Identified Version of ResearchMatch to Estimate Likelihood of Participating inClinical Research [Abstract]. Society for Advancing of Chicanos/Hispanics and Native Americans in Science (SACNAS).
  • Younghee Lee, Seonggyun Han, Dongwook Kim, Dokyoon Kim, EmrinHorgousluoglu, Shannon L Risacher, Andrew J Saykin, and Kwangsik Nho (). Genetic variation affecting exon skipping contributes to brain structural atrophy in Alzheimer’s disease. AMIA Jt Summits Transl Sci Proc.
  • R Gouripeddi, D Groat, A Lund, A Miller, K Sward, J Facelli (). Performing Reproducible Translational Research by Integrating Immunomes and Exposomes [Abstract]. Research Reproducibility, Salt Lake City, UT, USA.
  • S Collingwood, R Gouripeddi, B Wong K Sward (). Environmental influences on health outcomes—integrating real-time exposure measures from homes into longitudinal cohort studies: Lessons from the field. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018), Ottawa, Canada: Environmental Health Perspectives,, 2018(1).
  • A Lund, D Groat, R Gouripeddi, J Facelli, K Sward (). Using the Utah PRISMS Informatics Ecosystem to Bridge Gaps Between Exposomic and Immunological Research [Abstract]. III Initiative Spring 2018 Symposium, Salt Lake City, UT, USA.
  • R Gouripeddi, A Lund, N Burnett, L Tran, P Mo, R Madsen, M Cummins, K Sward, J Faceli (). Enabling Reproducible Computational Modeling: The Utah PRISMS Ecosystem [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • R Gouripeddi, M Cummins, B LaSalle, K Sward, W Dere, J Faceli (). Towards Reproducible Translational Research using Templates [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • R Gouripeddi, D Groat, A Lund, A Miller, K Sward, J Faceli (). Performing Reproducible Translational Research by Integrating Immunomes and Exposomes [Abstract]. Research Reproducibility 2018, Salt Lake City, UT, USA.
  • N Burnett, R Gouripeddi, P Mo, R Madsen, R Butcher, K Sward, J Faceli (). Development of a Sensor Metadata Library for Exposomic Studies. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018), Ottawa, Canada: Environmental Health Perspectives, ISEE Conference Abstracts, 2018(1).
  • R Gouripeddi, R Madsen, L Tran, P Mo, N Burnett, R Butcher, M Cummins, K Sward, J Faceli (). Generating Consistent Spatio-temporal Events of Exposure for Translational Exposomic Research. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018), Ottawa, Canada: Environmental Health Perspectives, ISEE Conference Abstracts, 2018(1).
  • V Tiase, R Gouripeddi, K Sward, N Burnett, R Butcher, P Mo, M Cummins (). Advancing Study Metadata Models to Support an Exposomic Informatics Infrastructure. The Joint Annual Meeting of the International Society of Exposure Science and the International Society for Environmental Epidemiology (ISES-ISEE 2018)Ottawa, Canada, Ottawa, Canada: Environmental Health Perspectives, ISEE Conference Abstracts, 2018(1).
  • Diane M Walker, AbdelRahman SE, Julio C Facelli (). Automatic Knowledge Discovery in the National Health and Nutrition Examination Survey [Abstract]. Association for Clinical and Translational Science.
  • Seonggyun Han, Dongwook Kim, Youngjun Kim, Kanghoon Choi, Jason Miller, DokyoonKim, and Younghee Lee (). CAS-viewer: Web-based tool for splicing-guided integrative analysis of multi-omics cancer data. BMC Bioinformatics.