Eamonn Kennedy

Eamonn Kennedy, PhD

Languages spoken: English

Academic Information

Departments Primary - Internal Medicine

Divisions: Epidemiology

Academic Office Information

eamonn.kennedy@utah.edu

Lab

Dr. Kennedy's research interests include epidemiological investigation and evidence-based evaluations, particularly those targeting Veteran health and chronic complex comorbidity following traumatic brain injury. His work centers on the intersection of machine learning methods, biological insights, and clinically impactful research.

Education History

Undergraduate University College Dublin
 BSc
Graduate Training University College Dublin
 MS
Graduate Training University College Dublin
 PhD
Postdoctoral Fellowship University of Notre Dame
 Postdoctoral Fellow

Selected Publications

Journal Article

  1. Roghani A,Wang CP,Henion A,Amuan M,Altalib H,LaFrance WC,Baca C,Van Cott A,Towne A,Kean J,Hinds SR,Kennedy E,Panahi S,Pugh M (2024). Mortality among veterans with epilepsy: Temporal significance of traumatic brain injury exposure. Epilepsia, 65(8), 2255-2269.
  2. Kennedy E,Ozmen M,Bouldin ED,Panahi S,Mobasher H,Troyanskaya M,Martindale SL,Merritt VC,O'Neil M,Sponheim SR,Remigio-Baker RA,Presson A,Swan AA,Werner JK,Greene TH,Wilde EA,Tate DF,Walker WC,Pugh M (2024). Phenotyping Depression After Mild Traumatic Brain Injury: Evaluating the Impact of Multiple Injury, Gender, and Injury Context. Journal of neurotrauma, 41(7-8), 924-933.
  3. Panahi S,Mayo J,Kennedy E,Christensen L,Kamineni S,Sagiraju HKR,Cooper T,Tate DF,Rupper R,Pugh M (2024). Identifying clinical phenotypes of frontotemporal dementia in post-9/11 era veterans using natural language processing. Frontiers in neurology, 15,
  4. Wade BSC,Tate DF,Kennedy E,Bigler ED,York GE,Taylor BA,Troyanskaya M,Hovenden ES,Goodrich-Hunsaker N,Newsome MR,Dennis EL,Abildskov T,Pugh MJ,Walker WC,Kenney K,Betts A,Shih R,Welsh RC,Wilde E (2024). Microstructural Organization of Distributed White Matter Associated With Fine Motor Control in US Service Members With Mild Traumatic Brain Injury. Journal of neurotrauma, 41(1-2), 32-40.
  5. Esmaeili A,Dismuke-Greer C,Pogoda TK,Amuan ME,Garcia C,Del Negro A,Myers M,Kennedy E,Cifu D,Pugh M (2024). Cannabis use disorder contributes to cognitive dysfunction in Veterans with traumatic brain injury. Frontiers in neurology, 15,
  6. Kennedy E,Manhapra A,Miles SR,Martindale S,Rowland J,Mobasher H,Myers M,Panahi S,Walker WC,Pugh M (2024). The Impact of Non-Pain Factors on Pain Interference Among U.S. Service Members and Veterans with Symptoms of Mild Traumatic Brain Injury. Journal of neurotrauma,
  7. Panahi S,Kennedy E,Roghani A,VegaYon G,VanCott A,Gugger JJ,Raquel Lopez M,Jo Pugh (2023). Veteran perspectives of epilepsy care: Impact of Veteran satisfaction, knowledge, and proactivity. Epilepsy & behavior, 144,
  8. Henion AK,Wang CP,Amuan M,Altalib HH,Towne AR,Hinds SR,Baca C,Lafrance WC,Van Cott AC,Kean J,Roghani A,Kennedy E,Panahi S,Pugh MJ (2023). Role of Deployment History on the Association Between Epilepsy and Traumatic Brain Injury in Post-9/11 Era US Veterans. Neurology, 101(24), E2571-E2584.
  9. Swan AA,Kennedy E,Cooper DB,Amuan ME,Mayo J,Tate DF,Song K,Eapen BC,Van Cott AC,Lopez MR,Pugh M (2023). Comorbidity and polypharmacy impact neurobehavioral symptoms and symptom validity failure among post-9/11 veterans with mild traumatic brain injury. Frontiers in neurology, 14,
  10. Gugger JJ, Kennedy E, Panahi S, Tate DF, Roghani A, Van Cott AC, Lopez MR, Altalib H, Diaz-Arrastia R, Pugh M (2022). Multimodal Quality of Life Assessment in Post-9/11 Veterans With Epilepsy: Impact of Drug Resistance, Traumatic Brain Injury, and Comorbidity. Neurology, 98(17), e1761-e1770.
  11. Kennedy E, Panahi S, Stewart IJ, Tate DF, Wilde EA, Kenney K, Werner JK, Gill J, Diaz-Arrastia R, Amuan M, Van Cott AC, Pugh M (2022). Traumatic Brain Injury and Early Onset Dementia in Post 9-11 Veterans. Brain injury, 36(5), 1-8.
  12. Stewart IJ,Amuan ME,Wang CP,Kennedy E,Kenney K,Werner JK,Carlson KF,Tate DF,Pogoda TK,Dismuke-Greer CE,Wright WS,Wilde EA,Pugh M (2022). Association between Traumatic Brain Injury and Subsequent Cardiovascular Disease among Post-9/11-Era Veterans. Frontiers in neurology, 79(11), 1122-1129.
  13. Kennedy E,Dennis EL,Lindsey HM,deRoon-Cassini T,Du Plessis S,Fani N,Kaufman ML,Koen N,Larson CL,Laskowitz S,Lebois LAM,Morey RA,Newsome MR,Palermo C,Pastorek NJ,Powers A,Scheibel R,Seedat S,Seligowski A,Stein DJ,Stevens J,Sun D,Thompson P,Troyanskaya M,van Rooij SJH,Watts AA,Tomas CW,Williams W,Hillary FG,Jo Pugh M,Wilde EA,Tate D (2022). Harmonizing PTSD Severity Scales Across Instruments and Sites. Neuropsychology, 37(4), 398-408.
  14. Elbogen EB,Amuan M,Kennedy E,Blakey SM,Graziano RC,Hooshyar D,Tsai J,Nelson RE,Vanneman ME,Jones AL,Pugh M (2022). Criminal Legal Involvement Among Recently Separated Veterans: Findings From the LIMBIC Study. Neuropsychology, 46(5), 385-394.
  15. Pugh MJ, Kennedy E, Gugger JJ, Mayo J, Tate D, Swan A, Kean J, Altalib H, Gowda S, Towne A, Hinds S, Van Cott A, Lopez MR, Jaramillo CA, Eapen BC, McCafferty RR, Salinsky M, Cramer J, McMillan KK, Kalvesmaki A, Diaz-Arrastia R, MINUTE Study Group (2021). The Military Injuries: Understanding Post-Traumatic Epilepsy Study: Understanding Relationships among Lifetime Traumatic Brain Injury History, Epilepsy, and Quality of Life. Journal of neurotrauma, 38(20), 2841-2850.
  16. Kennedy E, Geiser J, Arcadia CE, Weber PM, Rose C, Rubenstein BM, Rosenstein J (2021). Secret messaging with endogenous chemistry. Scientific reports, 11(1), 13960.
  17. Shakya P, Kennedy E, Rose C, Rosenstein J (2021). High-Dimensional Time Series Feature Extraction for Low-Cost Machine Olfaction. IEEE sensors journal, 21(3), 2495-2504.
  18. Shakya P,Kennedy E,Rose C,Rosenstein J (2021). High-Dimensional Time Series Feature Extraction for Low-Cost Machine Olfaction. Neuropsychology, 21(3), 2495-2504.
  19. Arcadia CE, Kennedy E, Geiser J, Dombroski A, Oakley K, Chen SL, Sprague L, Ozmen M, Sello J, Weber PM, Reda S, Rose C, Kim E, Rubenstein BM, Rosenstein J (2020). Multicomponent molecular memory. Nature communications, 11(1), 691.
  20. Rosenstein JK, Rose C, Reda S, Weber PM, Kim E, Sello J, Geiser J, Kennedy E, Arcadia C, Dombroski A, Oakley K, Chen SL, Tann H, Rubenstein B (2020). Principles of Information Storage in Small-Molecule Mixtures. IEEE transactions on nanobioscience, 19(3), 378-384.
  21. Hu K, Kennedy E, Rosenstein J (2020). Radio-Frequency Electrochemical Sensor Arrays for Biological Imaging. Biophysical journal, 118(3), 622a.
  22. Kennedy E, Arcadia CE, Geiser J, Weber PM, Rose C, Rubenstein BM, Rosenstein J (2019). Encoding information in synthetic metabolomes. PloS one, 14(7), e0217364.
  23. Rigo E, Dong Z, Park JH, Kennedy E, Hokmabadi M, Almonte-Garcia L, Ding L, Aluru N, Timp (2019). Measurements of the size and correlations between ions using an electrolytic point contact. Nature communications, 10(1), 2382.
  24. Shakya P, Kennedy E, Rose C, Rosenstein J (2019). Time series feature extraction for machine olfaction. IEEE sensors journal, 1(4), 1.
  25. Kennedy E, Arcadia C, Wilkinson C (2019). A 'molecular thumb drive' stores big files in small droplets. Nature, 571(7764),
  26. Hu K, Kennedy E, Rosenstein J (2019). High frequency dielectric spectroscopy array with code division multiplexing for biological imaging. IEEE Biomedical Circuits and Systems Conference, 1-4.
  27. Kennedy EM, Dowall SD, Salguero FJ, Yeates P, Aram M, Hewson (2019). A vaccine based on recombinant modified Vaccinia Ankara containing the nucleoprotein from Lassa virus protects against disease progression in a guinea pig model. Vaccine, 37(36), 5404-5413.
  28. Ozmen M, Kennedy E, Rose J, Shakya P, Rosenstein JK, Rose (2018). High speed chemical vapor communication using photoionization detectors. ... IEEE Global Communications Conference. IEEE Global Communications Conference, 1-6.
  29. Webster J, Shakya P, Kennedy E, Caplan M, Rose C, Rosenstein J (2018). TruffleBot: Low-cost multi-parametric machine olfaction. IEEE Biomedical Circuits and Systems Conference, 1-4.
  30. Ozmen M, Kennedy E, Rose J, Shakya P, Rosenstein JK, Rose (2018). High speed chemical vapor communication using photoionization detectors in turbulent flow. IEEE transactions on molecular, biological, and multi-scale communications, 4(3), 160-170.
  31. Shakya P, Kennedy E, Rose C, Rosenstein J (2018). Correlated transmission and detection of concentration-modulated chemical vapor plumes. IEEE sensors journal, 18(16), 6504-6509.
  32. Kennedy E, Hokmabadi M, Dong Z, McKelvey K, Nelson EM, Timp (2018). Method for Dynamically Detecting Secretions from Single Cells Using a Nanopore. Nano letters, 18(7), 4263-4272.
  33. Kennedy E, Shakya P, Ozmen M, Rose C, Rosenstein J (2018). Spatiotemporal information preservation in turbulent vapor plumes. Applied physics letters, 112(26), 264103.
  34. Ozmen M, Kennedy E, Rose J, Shakya P, Rosenstein JK, Rose (2018). High Speed Chemical Vapor Communication Using Photoionization Detectors in Turbulent Flow. IEEE transactions on molecular, biological, and multi-scale communications, 4(4), 160-170.
  35. Ozmen M,Kennedy E,Rose J,Shakya P,Rosenstein JK,Rose (2018). High Speed Chemical Vapor Communication Using Photoionization Detectors in Turbulent Flow. Neuropsychology, 4(3), 160-170.
  36. Kennedy E,Shakya P,Ozmen M,Rose C,Rosenstein J (2018). Spatiotemporal information preservation in turbulent vapor plumes. Neuropsychology, 112(26),
  37. Dong Z, Kennedy E, Hokmabadi M, Timp (2017). Discriminating Residue Substitutions in a Single Protein Molecule Using a Sub-nanopore. ACS nano, 11(6), 5440-5452.
  38. Kolmogorov M, Kennedy E, Dong Z, Timp G, Pevzner P (2017). Single-molecule protein identification by sub-nanopore sensors. PLoS computational biology, 13(5), e1005356.
  39. Kennedy E, Kolmogorov M, Dong Z, Pevzner P, Timp (2017). Single Molecule Identification Against Proteomes using Sub-Nanometer Pores. Biophysical journal, 112(3), 486a.
  40. Dong Z, Kennedy E, Timp (2017). Using a Sub-nanopore to Discriminate Residue Substitutions in a Single Protein Molecule. NanoWorld Journal, 3(Supp 1), 1-5.
  41. Kennedy E, Dong Z, Tennant C, Timp (2016). Reading the primary structure of a protein with 0.07 nm3 resolution using a subnanometre-diameter pore. Nature nanotechnology, 11(11), 968-976.
  42. Kennedy E, Nelson EM, Tanaka T, Damiano J, Timp (2016). Live Bacterial Physiology Visualized with 5 nm Resolution Using Scanning Transmission Electron Microscopy. ACS nano, 10(2), 2669-77.
  43. Dong Z, Kennedy E, Tennant C, Timp G (2016). Detecting the Sequence of Amino Acid Quadromers in Protein Molecules using a Sub-Nanometer-Diameter Pore. Biophysical journal, 110(3), 509a.
  44. Kennedy E, Al-Majmaie R, Al-Rubeai M, Zerulla D, Rice J (2015). Quantifying nanoscale biochemical heterogeneity in human epithelial cancer cells using combined AFM and PTIR absorption nanoimaging. Journal of biophotonics, 8(1-2), 133-41.
  45. Al-Attar N, Kennedy E, Kelly G, Rice J (2015). Photoluminescence blinking from single CdSeS/ZnS quantum dots in a conducting polymer matrix. The journal of physical chemistry. C, Nanomaterials and interfaces, 119(11), 6278-6287.
  46. Al-Majmaie R, Kennedy E, Al-Rubeai M, Rice JH, Zerulla (2015). AFM-based bivariate morphological discrimination of apoptosis induced by photodynamic therapy using photosensitizer-functionalized gold nanoparticles. RSC advances, 5(101), 82983-82991.
  47. Al-Majmaie R,Kennedy E,Al-Rubeai M,Rice J,Zerulla (2015). AFM-based bivariate morphological discrimination of apoptosis induced by photodynamic therapy using photosensitizer-functionalized gold nanoparticles. Neuropsychology, 5(101), 82983-82991.
  48. Reddy MH, Al-Shammari RM, Al-Attar N, Kennedy E, Rogers L, Lopez S, Senge MO, Keyes TE, Rice J (2014). Micro- or nanorod and nanosphere structures derived from a series of phenyl-porphyrins. Physical chemistry chemical physics, 16(9), 4386-93.
  49. Mousavi ZE, Kennedy E, Fanning S, Rice JH, Butler (2014). The effect of Quaternary Ammonium Compounds on the attachment of wild and adapted Pseudomonas putida strains to different contact materials used in the food sector. Food control, 42, 277-283.
  50. Kennedy E, Al-Majomaie R, Al-Rubeai M, Zerulla D, Rice J (2014). Nanoscale precision subcellular chemical identification using quantitative IR nanoimage analysis based on multiple-IR laser illumination. Conference on Lasers and Electro-optics, 1-2.
  51. Mousavi Z,Kennedy E,Fanning S,Rice J,Butler (2014). The effect of Quaternary Ammonium Compounds on the attachment of wild and adapted Pseudomonas putida strains to different contact materials used in the food sector. Neuropsychology, 42, 277-283.
  52. Harsha Vardhan Reddy M,Al-Shammari R,Al-Attar N,Kennedy E,Rogers L,Lopez S,Senge M,Keyes T,Rice (2014). Micro- or nanorod and nanosphere structures derived from a series of phenyl-porphyrins. Neuropsychology, 16(9), 4386-4393.
  53. Reeves HE, Lotz SB, Kennedy E, Randall LP, Coldham NG, La Ragione R (2013). Evaluation of an autogenous vaccine in cattle against Escherichia coli bearing the CTX-M-14 plasmid. Research in veterinary science, 94(3), 419-24.
  54. Lordan F, Damm S, Kennedy E, Mallon C, Forster RJ, Keyes TE, Rice J (2013). The effect of Ag nanoparticles on surface-enhanced luminescence from Au nanovoid arrays. Plasmonics (Norwell, Mass.), 8(4), 1567-1575.
  55. Al-Alttar N, Kopf I, Flavin K, Kennedy E, Giordani S, Rice J (2013). Surface-enhanced Raman scattering spectra of radial breathing and G band modes in functionalised nanotubes. Chemical physics letters, 568-569, 95-100.
  56. Kennedy E, Al-Majmaie R, Al-Rubeai M, Zerulla D, Rice J (2013). Nanoscale infrared absorption imaging permits non-destructive intracellular photosensitizer localization for subcellular uptake analysis. RSC advances, 3(33), 13789-13795.
  57. Lordan F,Damm S,Kennedy E,Mallon C,Forster R,Keyes T,Rice (2013). The Effect of Ag Nanoparticles on Surface-Enhanced Luminescence from Au Nanovoid Arrays. Neuropsychology, 8(4), 1567-1575.
  58. Al-Alttar N,Kopf I,Flavin K,Kennedy E,Giordani S,Rice (2013). Surface-enhanced Raman scattering spectra of radial breathing and G band modes in functionalised nanotubes. Neuropsychology, 568-569, 95-100.
  59. Al-Attar N, Kopf I, Kennedy E, Flavin K, Giordani S, Rice J (2012). Surface-enhanced Raman scattering from small numbers of purified and oxidised single-walled carbon nanotubes. Chemical physics letters, 535, 146-151.
  60. Al-Attar N,Kopf I,Kennedy E,Flavin K,Giordani S,Rice (2012). Surface-enhanced Raman scattering from small numbers of purified and oxidised single-walled carbon nanotubes. Neuropsychology, 535, 146-151.
  61. Yarrow F, Kennedy E, Rice J (2011). IR absorption nanoscopy and nanoimaging of hemoglobin. European biophysics journal, 1-5.
  62. Kennedy E, Yarrow F, Rice J (2011). Mid-infrared nanoimaging and nanoscopy of hemoglobin. Journal of biophotonics, 1-5.
  63. Yarrow F,Kennedy E,Salaun F,Rice (2011). Sub-wavelength infrared imaging of lipids. Neuropsychology, 2(1), 37-43.
  64. Yarrow F, Kennedy E, Salaun F, Rice J (2010). Sub-wavelength infrared imaging of lipids. Biomedical optics express, 2(1), 37-43.

Review

  1. Pugh MJ, Kennedy E, Prager EM, Humpherys J, Dams-O'Connor K, Hack D, McCafferty MK, Wolfe J, Yaffe K, McCrea M, Ferguson AR, Lancashire L, Ghajar J, Lumba-Brown (2021). Phenotyping the Spectrum of Traumatic Brain Injury: A Review and Pathway to Standardization. Journal of neurotrauma, 38(23), 3222-3234.

Book Chapter

  1. Kennedy E, Yoxall E, Rice (2018). Nanoscale Spectroscopy in the Infrared with Applications to Biology. 305-344.
  2. Kennedy E,Yoxall E,Rice (2013). Nanoscale spectroscopy in the infrared with applications to biology. Neuropsychology, 305-344.

Conference Proceedings

  1. Hu K,Kennedy E,Rosenstein J (2019). High Frequency Dielectric Spectroscopy Array with Code Division Multiplexing for Biological Imaging. Neuropsychology,
  2. Webster J,Shakya P,Kennedy E,Caplan M,Rose C,Rosenstein J (2018). TruffleBot: Low-Cost Multi-Parametric Machine Olfaction. Neuropsychology,
  3. Ozmen M,Kennedy E,Rose J,Shakya P,Rosenstein JK,Rose (2018). High Speed Chemical Vapor Communication Using Photoionization Detectors. Neuropsychology,
  4. Kennedy E, Al-Majomaie R, Zerulla D, Al-Rubeai M, Rice J (2014). Human epithelial cancer cells studied using combined AFM-IR absorption nanoimaging. 9129, 91291M.
  5. Kennedy E,Al-Majomaie R,Al-Rubeai M,Zerulla D,Rice J (2014). Nanoscale precision subcellular chemical identification using quantitative IR nanoimage analysis based on multiple-IR laser illumination. Neuropsychology,
  6. Kennedy E,Al-Majomaie R,Zerulla D,Al-Rubeai M,Rice J (2014). Human epithelial cancer cells studied using combined AFM-IR absorption nanoimaging. Neuropsychology, 9129,
  7. Al-Majmaie R, Alattar N, Kennedy E, Al-Rubeai M, Rice JH, Zerulla (2013). Raman spectroscopy for intracellular localisation of meso-Tetraphenylporphyrin-gold nanoparticles conjugates. 8815, 40-44.
  8. Al-Majmaie R,Alattar N,Kennedy E,Al-Rubeai M,Rice J,Zerulla (2013). Raman spectroscopy for intracellular localisation of meso- tetraphenylporphyrin-gold nanoparticles conjugates. Neuropsychology, 8815,
  9. Kennedy E, Yarrow F, Rice J (2011). IR nanoscale spectroscopy and imaging. 8105, 51-55.

Letter

  1. Kennedy E, Nelson EM, Damiano J, Timp (2017). Gene Expression in Electron-Beam-Irradiated Bacteria in Reply to "Live Cell Electron Microscopy Is Probably Impossible". ACS nano, 11(1), 3-7.
  2. Kennedy E, Yarrow F, Rice J (2011). Nanoscale spectroscopy and imaging of hemoglobin. Journal of biophotonics, 4(9), 588-91.

Other

  1. Kennedy (2014). Biomedical Applications of Photothermal Induced Resonance Nanoscale Imaging.
  2. Kennedy (2011). Infrared Nanoscopy and Chemical Mapping with an Atomic Force Microscope.