Johannes W. Rossen

Johannes W. Rossen, PhD

Academic Information

Departments Adjunct - Pathology

Academic Office Information

john.rossen@utah.edu

Selected Publications

Journal Article

  1. Schuele L, Cassidy H, Peker N, Rossen JWA, Couto N (2021). Future potential of metagenomics in clinical laboratories. Expert Rev Mol Diagn.
  2. Schuele L, Lizarazo-Forero E, Cassidy H, Strutzberg-Minder K, Boehmer J, Schuetze S, Loebert S, Lambrecht C, Harlizius J, Friedrich AW, Peter S, Rossen JWA, Couto N (2021). First detection of porcine respirovirus 1 in Germany and the Netherlands. Transbound Emerg Dis, 68(6), 3120-3125.
  3. Peker N, Schuele L, Kok N, Terrazos M, Neuenschwander SM, de Beer J, Akkerman O, Peter S, Ramette A, Merker M, Niemann S, Couto N, Sinha B, Rossen JW (2021). Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis. Microb Genom, 7(11).
  4. Lisotto P, Raangs EC, Couto N, Rosema S, Lokate M, Zhou X, Friedrich AW, Rossen JWA, Harmsen HJM, Bathoorn E, Chlebowicz-Fliss MA (2021). Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium. BMC Genomics, 22(1), 758.
  5. Lisotto P, Couto N, Rosema S, Lokate M, Zhou X, Bathoorn E, Harmsen HJM, Friedrich AW, Rossen JWA, Chlebowicz-Fliss MA (2021). Molecular Characterisation of Vancomycin-Resistant Enterococcus faecium Isolates Belonging to the Lineage ST117/CT24 Causing Hospital Outbreaks. Front Microbiol, 12, 728356.
  6. Pakbin B, Brck WM, Rossen JWA (2021). Virulence Factors of Enteric Pathogenic Escherichia coli: A Review. Int J Mol Sci, 22(18).
  7. Schuele L, Lizarazo-Forero E, Strutzberg-Minder K, Schtze S, Lbert S, Lambrecht C, Harlizius J, Friedrich AW, Peter S, Rossen JWA, Couto N (2021). Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch-German border region. Transbound Emerg Dis.
  8. Coolen JPM, Jamin C, Savelkoul PHM, Rossen JWA, Wertheim HFL, Matamoros SP, van Alphen LB, On Behalf Of Sig Bioinformatics In Medical Microbiology Nl Consortium (2021). Centre-specific bacterial pathogen typing affects infection-control decision making. Microb Genom, 7(8).
  9. Theelen MJP, Luiken REC, Wagenaar JA, Sloet van Oldruitenborgh-Oosterbaan MM, Rossen JWA, Zomer AL (2021). The Equine Faecal Microbiota of Healthy Horses and Ponies in The Netherlands: Impact of Host and Environmental Factors. Animals (Basel), 11(6).
  10. Stohr JJJM, Kluytmans-van den Bergh MFQ, Weterings VATC, Rossen JWA, Kluytmans JAJW (2021). Distinguishing bla KPC Gene-Containing IncF Plasmids from Epidemiologically Related and Unrelated Enterobacteriaceae Based on Short- and Long-Read Sequence Data. Antimicrob Agents Chemother, 65(6).
  11. Nijhuis RHT, Chlebowicz-Fliss MA, Smilde AE, Rossen JWA, Weersink AJL, Gigengack-Baars ACM (2021). Whole-genome sequencing analysis reveals the spread of a vanB-carrying transposon among different vancomycin-resistant Enterococcus faecium clinical isolates in a non-endemic setting. J Hosp Infect, 110, 52-59.
  12. Verburg I, van Veelen HPJ, Waar K, Rossen JWA, Friedrich AW, Hernndez Leal L, Garca-Cobos S, Schmitt H (2021). Effects of Clinical Wastewater on the Bacterial Community Structure from Sewage to the Environment. Microorganisms, 9(4).
  13. Camp J, Schuster S, Vavra M, Schweigger T, Rossen JWA, Reuter S, Kern WV (2021). Limited Multidrug Resistance Efflux Pump Overexpression among Multidrug-Resistant Escherichia coli Strains of ST131. Antimicrob Agents Chemother, 65(4).
  14. Schuster S, Vavra M, Kser R, Rossen JWA, Kern WV (2021). New Topoisomerase Inhibitors: Evaluating the Potency of Gepotidacin and Zoliflodacin in Fluoroquinolone-Resistant Escherichia coli upon tolC Inactivation and Differentiating Their Efflux Pump Substrate Nature. Antimicrob Agents Chemother, 65(2).
  15. Louka C, Ravensbergen SJ, Ott A, Zhou X, Garca-Cobos S, Friedrich AW, Pournaras S, Rosema S, Rossen JW, Stienstra Y, Bathoorn E (2020). Predominance of CTX-M-15-producing ST131 strains among ESBL-producing Escherichia coli isolated from asylum seekers in the Netherlands. J Antimicrob Chemother, 76(1), 70-76.
  16. da Cruz Campos AC, Couto N, Lucas da Silva Andrade N, Friedrich AW, de Paula Rosa AC, Vieira Damasco P, Chlebowicz-Fliss MA, Rossen JWA, SOLIDNESS Working Group (2020). Virulence and resistance properties of E. coli isolated from urine samples of hospitalized patients in Rio de Janeiro, Brazil - The role of mobile genetic elements. Int J Med Microbiol, 310(8), 151453.
  17. Schuele L, Cassidy H, Lizarazo E, Strutzberg-Minder K, Schuetze S, Loebert S, Lambrecht C, Harlizius J, Friedrich AW, Peter S, Niesters HGM, Rossen JWA, Couto N (2020). Assessment of Viral Targeted Sequence Capture Using Nanopore Sequencing Directly from Clinical Samples. Viruses, 12(12).
  18. van den Beld MJC, Reubsaet FAG, Pijnacker R, Harpal A, Kuiling S, Heerkens EM, Hoeve-Bakker BJAD, Noomen RCEA, Hendriks ACA, Borst D, van der Heide H, Kooistra-Smid AMDM, Rossen JWA (2020). A Multifactorial Approach for Surveillance of Shigella spp. and Entero-Invasive Escherichia coli Is Important for Detecting (Inter)national Clusters. Front Microbiol, 11, 564103.
  19. Heireman L, Hamerlinck H, Vandendriessche S, Boelens J, Coorevits L, De Brabandere E, De Waegemaeker P, Verhofstede S, Claus K, Chlebowicz-Flissikowska MA, Rossen JWA, Verhasselt B, Leroux-Roels I (2020). Toilet drain water as a potential source of hospital room-to-room transmission of carbapenemase-producing Klebsiella pneumoniae. J Hosp Infect, 106(2), 232-239.
  20. Campos ACDC, Andrade NL, Couto N, Mutters NT, de Vos M, Rosa ACP, Damasco PV, Lo Ten Foe JR, Friedrich AW, Chlebowicz-Flissikowska MA, Rossen JWA (2020). Characterization of fosfomycin heteroresistance among multidrug-resistant Escherichia coli isolates from hospitalized patients in Rio de Janeiro, Brazil. J Glob Antimicrob Resist, 22, 584-593.
  21. Zhou X, Willems RJL, Friedrich AW, Rossen JWA, Bathoorn E (2020). Enterococcus faecium: from microbiological insights to practical recommendations for infection control and diagnostics. Antimicrob Resist Infect Control, 9(1), 130.
  22. Stohr JJJM, Kluytmans-van den Bergh MFQ, Wedema R, Friedrich AW, Kluytmans JAJW, Rossen JWA (2020). Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in Enterobacteriaceae using PlasmidSPAdes assembly of short-read sequence data. Microb Genom, 6(7).
  23. Stohr JJJM, Verweij JJ, Buiting AGM, Rossen JWA, Kluytmans JAJW (2020). Within-patient plasmid dynamics in Klebsiella pneumoniae during an outbreak of a carbapenemase-producing Klebsiella pneumoniae. PLoS One, 15(5), e0233313.
  24. Gilbert MJ, IJsseldijk LL, Rubio-Garca A, Grne A, Duim B, Rossen J, Zomer AL, Wagenaar JA (2020). After the bite: bacterial transmission from grey seals (Halichoerus grypus) to harbour porpoises (Phocoena phocoena). R Soc Open Sci, 7(5), 192079.
  25. van Belkum A, Burnham CD, Rossen JWA, Mallard F, Rochas O, Dunne WM Jr (2020). Innovative and rapid antimicrobial susceptibility testing systems. Nat Rev Microbiol, 18(5), 299-311.
  26. Oberhettinger P, Schle L, Marschal M, Bezdan D, Ossowski S, Drfel D, Vogel W, Rossen JW, Willmann M, Peter S (2020). Description of Citrobacter cronae sp. nov., isolated from human rectal swabs and stool samples. Int J Syst Evol Microbiol, 70(5), 2998-3003.
  27. Grschel MI, Meehan CJ, Barilar I, Diricks M, Gonzaga A, Steglich M, Conchillo-Sol O, Scherer IC, Mamat U, Luz CF, De Bruyne K, Utpatel C, Yero D, Gibert I, Daura X, Kampmeier S, Rahman NA, Kresken M, van der Werf TS, Alio I, Streit WR, Zhou K, Schwartz T, Rossen JWA, Farhat MR, Schaible UE, Nbel U, Rupp J, Steinmann J, Niemann S, Kohl TA (2020). The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia. Nat Commun, 11(1), 2044.
  28. Benuli K, Pir M, Couto N, Chlebowicz M, Rossen JWA, Zorec TM, Seme K, Poljak M, Lejko Zupanc T, Rui-Sablji E, Cerar T (2020). Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates. PLoS One, 15(4), e0231503.
  29. Ditz B, Christenson S, Rossen J, Brightling C, Kerstjens HAM, van den Berge M, Faiz A (2020). Sputum microbiome profiling in COPD: beyond singular pathogen detection. Thorax, 75(4), 338-344.
  30. Stohr JJJM, Kluytmans-van den Bergh MFQ, Verhulst CJMM, Rossen JWA, Kluytmans JAJW (2020). Development of amoxicillin resistance in Escherichia coli after exposure to remnants of a non-related phagemid-containing E. coli: an exploratory study. Antimicrob Resist Infect Control, 9(1), 48.
  31. Mendes CI, Lizarazo E, Machado MP, Silva DN, Tami A, Ramirez M, Couto N, Rossen JWA, Carrio JA (2020). DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing. Microb Genom, 6(3).
  32. Cremers AJH, Coolen JPM, Bleeker-Rovers CP, van der Geest-Blankert ADJ, Haverkate D, Hendriks H, Henriet SSV, Huynen MA, Kolwijck E, Liem D, Melchers WJG, Rossen JW, Zoll J, van Heijst A, Hopman J, Wertheim HFL (2020). Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unit. Sci Rep, 10(1), 2619.
  33. Hendriks ACA, Reubsaet FAG, Kooistra-Smid AMDM, Rossen JWA, Dutilh BE, Zomer AL, van den Beld MJC, IBESS group (2020). Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity. BMC Genomics, 21(1), 138.
  34. Miro E, Rossen JWA, Chlebowicz MA, Harmsen D, Brisse S, Passet V, Navarro F, Friedrich AW, Garca-Cobos S (2020). Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain. Front Microbiol, 10, 2961.
  35. Tafaj S, Gona F, Rodrigues CF, Kapisyzi P, Caushi F, Rossen JW, Cirillo DM (2020). Whole-Genome Sequences of Two NDM-1-Producing Pseudomonas aeruginosa Strains Isolated in a Clinical Setting in Albania in 2018. Microbiol Resour Announc, 9(1).
  36. van den Beld MJC, Warmelink E, Friedrich AW, Reubsaet FAG, Schipper M, de Boer RF, Notermans DW, Petrignani MWF, van Zanten E, Rossen JWA, Friesema IHM, Kooistra-Smid AMDM, IBESS working group (2019). Incidence, clinical implications and impact on public health of infections with Shigella spp. and entero-invasive Escherichia coli (EIEC): results of a multicenter cross-sectional study in the Netherlands during 2016-2017. BMC Infect Dis, 19(1), 1037.
  37. Giordano C, Klak A, Barnini S, Chlebowicz MA, Menconi M, Rossen JW, Friedrich AW, Bathoorn E (2019). Reduced Fitness Costs of mcr-1.2 Compared to Mutated pmrB in Isogenic Colistin-Resistant KPC-3-Producing Klebsiella pneumoniae. mSphere, 4(6).
  38. da Cruz Campos AC, Cavallo FM, L Andrade N, van Dijl JM, Couto N, Zrimec J, Lo Ten Foe JR, P Rosa AC, V Damasco P, Friedrich AW, Chlebowicz-Flissikowska MA, Rossen JWA (2019). Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages. Microorganisms, 7(11).
  39. Kluytmans-van den Bergh MFQ, Bruijning-Verhagen PCJ, Vandenbroucke-Grauls CMJE, de Brauwer EIGB, Buiting AGM, Diederen BM, van Elzakker EPM, Friedrich AW, Hopman J, Al Naiemi N, Rossen JWA, Ruijs GJHM, Savelkoul PHM, Verhulst C, Vos MC, Voss A, Bonten MJM, Kluytmans JAJW, SoM Study Group (2019). Contact precautions in single-bed or multiple-bed rooms for patients with extended-spectrum β-lactamase-producing Enterobacteriaceae in Dutch hospitals: a cluster-randomised, crossover, non-inferiority study. Lancet Infect Dis, 19(10), 1069-1079.
  40. Purtolas-Balint F, Rossen JWA, Oliveira Dos Santos C, Chlebowicz MMA, Raangs EC, van Putten ML, Sola-Campoy PJ, Han L, Schmidt M, Garca-Cobos S (2019). Revealing the Virulence Potential of Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing. Front Microbiol, 10, 1970.
  41. Veloo ACM, Baas WH, Haan FJ, Coco J, Rossen JW (2019). Prevalence of antimicrobial resistance genes in Bacteroides spp. and Prevotella spp. Dutch clinical isolates. Clin Microbiol Infect, 25(9), 1156.e9-1156.e13.
  42. Trigo da Roza F, Couto N, Carneiro C, Cunha E, Rosa T, Magalhes M, Tavares L, Novais, Peixe L, Rossen JW, Lamas LP, Oliveira M (2019). Commonality of Multidrug-Resistant Klebsiella pneumoniae ST348 Isolates in Horses and Humans in Portugal. Front Microbiol, 10, 1657.
  43. Damasco PV, Correal JCD, Cruz-Campos ACD, Wajsbrot BR, Cunha RGD, Fonseca AGD, Castier MB, Fortes CQ, Jazbick JC, Lemos ERS, Rossen JW, Leo RS, Hirata Junior R, Guaraldi ALM (2019). Epidemiological and clinical profile of infective endocarditis at a Brazilian tertiary care center: an eight-year prospective study. Rev Soc Bras Med Trop, 52, e2018375.
  44. Peker N, Garcia-Croes S, Dijkhuizen B, Wiersma HH, van Zanten E, Wisselink G, Friedrich AW, Kooistra-Smid M, Sinha B, Rossen JWA, Couto N (2019). A Comparison of Three Different Bioinformatics Analyses of the 16S-23S rRNA Encoding Region for Bacterial Identification. Front Microbiol, 10, 620.
  45. van Hoek AHAM, van Veldhuizen JNJ, Friesema I, Coipan C, Rossen JWA, Bergval IL, Franz E (2019). Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes. BMC Genomics, 20(1), 271.
  46. Rossen JWA, Dombrecht J, Vanfleteren D, De Bruyne K, van Belkum A, Rosema S, Lokate M, Bathoorn E, Reuter S, Grundmann H, Ertel J, Higgins PG, Seifert H (2019). Epidemiological Typing of Serratia marcescens Isolates by Whole-Genome Multilocus Sequence Typing. J Clin Microbiol, 57(4).
  47. Schuster S, Bohnert JA, Vavra M, Rossen JW, Kern WV (2019). Proof of an Outer Membrane Target of the Efflux Inhibitor Phe-Arg-β-Naphthylamide from Random Mutagenesis. Molecules, 24(3).
  48. Souverein D, Euser SM, Herpers BL, Kluytmans J, Rossen JWA, Den Boer JW (2019). Association between rectal colonization with Highly Resistant Gram-negative Rods (HR-GNRs) and subsequent infection with HR-GNRs in clinical patients: A one year historical cohort study. PLoS One, 14(1), e0211016.
  49. Ravensbergen SJ, Louka C, Ott A, Rossen JW, Cornish D, Pournaras S, Bathoorn E, Stienstra Y (2019). Proportion of asylum seekers carrying multi-drug resistant microorganisms is persistently increased after arrival in the Netherlands. Antimicrob Resist Infect Control, 8, 6.
  50. Lizarazo E, Couto N, Vincenti-Gonzalez M, Raangs EC, Velasco Z, Bethencourt S, Jaenisch T, Friedrich AW, Tami A, Rossen JW (2019). Applied shotgun metagenomics approach for the genetic characterization of dengue viruses. J Biotechnol, 306S, 100009.
  51. Zhou X, Chlebowicz MA, Bathoorn E, Rosema S, Couto N, Lokate M, Arends JP, Friedrich AW, Rossen JWA (2018). Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements. J Antimicrob Chemother, 73(12), 3259-3267.
  52. van Mens SP, Ten Doesschate T, Kluytmans-van den Bergh MFQ, Mouton JW, Rossen JWA, Verhulst C, Bonten MJM, Kluytmans JAJW (2018). Fosfomycin Etest for Enterobacteriaceae: Interobserver and interlaboratory agreement. Int J Antimicrob Agents, 52(5), 678-681.
  53. Dinkelacker AG, Vogt S, Oberhettinger P, Mauder N, Rau J, Kostrzewa M, Rossen JWA, Autenrieth IB, Peter S, Liese J (2018). Typing and Species Identification of Clinical Klebsiella Isolates by Fourier Transform Infrared Spectroscopy and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. J Clin Microbiol, 56(11).
  54. Veloo ACM, Chlebowicz M, Winter HLJ, Bathoorn D, Rossen JWA (2018). Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter. J Antimicrob Chemother, 73(10), 2687-2690.
  55. Colello R, Krger A, Conza JD, Rossen JWA, Friedrich AW, Gutkind G, Etcheverra AI, Padola NL (2018). Antimicrobial Resistance in Class 1 Integron-Positive Shiga Toxin-Producing Escherichia coli Isolated from Cattle, Pigs, Food and Farm Environment. Microorganisms, 6(4).
  56. van den Beld MJC, de Boer RF, Reubsaet FAG, Rossen JWA, Zhou K, Kuiling S, Friedrich AW, Kooistra-Smid MAMD (2018). Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli. J Clin Microbiol, 56(10).
  57. Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carrio JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW (2018). Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens. Sci Rep, 8(1), 13767.
  58. Peker N, Couto N, Sinha B, Rossen JW (2018). Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches. Clin Microbiol Infect, 24(9), 944-955.
  59. Huizinga P, Schrauwen E, Garca-Cobos S, Willemsen I, Verhulst C, Friedrich AW, Savelkoul PHM, Rossen JW, Kluytmans J (2018). Extended-spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) isolated from bean sprouts in the Netherlands. PLoS One, 13(8), e0203338.
  60. Gomes A, van Oosten M, Bijker KLB, Boiten KE, Salomon EN, Rosema S, Rossen JWA, Natour E, Douglas YL, Kampinga GA, van Assen S, Sinha B (2018). Sonication of heart valves detects more bacteria in infective endocarditis. Sci Rep, 8(1), 12967.
  61. Fleres G, Couto N, Lokate M, van der Sluis LWM, Ginevra C, Jarraud S, Deurenberg RH, Rossen JW, Garca-Cobos S, Friedrich AW (2018). Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing. Microorganisms, 6(3).
  62. Lizarazo E, Couto N, Vincenti-Gonzalez M, Raangs EC, Jaenisch T, Friedrich AW, Tami A, Rossen JW (2018). Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics. Genome Announc, 6(25).
  63. Zhou K, Luo Q, Wang Q, Huang C, Lu H, Rossen JWA, Xiao Y, Li L (2018). Silent transmission of an IS1294b-deactivated mcr-1 gene with inducible colistin resistance. Int J Antimicrob Agents, 51(6), 822-828.
  64. Krger A, Burgn J, Friedrich AW, Rossen JWA, Lucchesi PMA (2018). ArgO145, a Stx2a prophage of a bovine O145:H- STEC strain, is closely related to phages of virulent human strains. Infect Genet Evol, 60, 126-132.
  65. Gabarrini G, Chlebowicz MA, Vega Quiroz ME, Veloo ACM, Rossen JWA, Harmsen HJM, Laine ML, van Dijl JM, van Winkelhoff AJ (2018). Conserved Citrullinating Exoenzymes in Porphyromonas Species. J Dent Res, 97(5), 556-562.
  66. Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-Garca A, Rossen JW, Duim B, Wagenaar JA (2018). Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina). Int J Syst Evol Microbiol, 68(5), 1787-1794.
  67. Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, He S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, OGrady J, Paracchini V, Rossen JWA, Rupp E, Vamathevan J, Venturi V, Van den Eede G (2018). The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies. F1000Res, 7.
  68. Couto N, Chlebowicz MA, Raangs EC, Friedrich AW, Rossen JW (2018). Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics. Genome Announc, 6(14).
  69. Rossen JWA, Friedrich AW, Moran-Gilad J, ESCMID Study Group for Genomic and Molecular Diagnostics ESGMD (2017). Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology. Clin Microbiol Infect, 24(4), 355-360.
  70. Heida A, Dijkstra A, Muller Kobold A, Rossen JW, Kindermann A, Kokke F, de Meij T, Norbruis O, Weersma RK, Wessels M, Hummel T, Escher J, van Wering H, Hendriks D, Mearin L, Groen H, Verkade HJ, van Rheenen PF (2017). Efficacy of Home Telemonitoring versus Conventional Follow-up: A Randomized Controlled Trial among Teenagers with Inflammatory Bowel Disease. J Crohns Colitis, 12(4), 432-441.
  71. Top J, Sinnige JC, Brouwer EC, Werner G, Corander J, Severin JA, Jansen R, Bathoorn E, Bonten MJM, Rossen JWA, Willems RJL (2018). Identification of a Novel Genomic Island Associated with vanD-Type Vancomycin Resistance in Six Dutch Vancomycin-Resistant Enterococcus faecium Isolates. Antimicrob Agents Chemother, 62(3).
  72. Desmet S, Nepal S, van Dijl JM, Van Ranst M, Chlebowicz MA, Rossen JW, Van Houdt JKJ, Maes P, Lagrou K, Bathoorn E (2018). Antibiotic Resistance Plasmids Cointegrated into a Megaplasmid Harboring the blaOXA-427 Carbapenemase Gene. Antimicrob Agents Chemother, 62(3).
  73. Campos ACC, Andrade NL, Ferdous M, Chlebowicz MA, Santos CC, Correal JCD, Lo Ten Foe JR, Rosa ACP, Damasco PV, Friedrich AW, Rossen JWA (2018). Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil. Front Microbiol, 9, 243.
  74. Gigliucci F, von Meijenfeldt FAB, Knijn A, Michelacci V, Scavia G, Minelli F, Dutilh BE, Ahmad HM, Raangs GC, Friedrich AW, Rossen JWA, Morabito S (2018). Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients. Front Cell Infect Microbiol, 8, 25.
  75. Giordano C, Barnini S, Tsioutis C, Chlebowicz MA, Scoulica EV, Gikas A, Rossen JW, Friedrich AW, Bathoorn E (2017). Expansion of KPC-producing Klebsiella pneumoniae with various mgrB mutations giving rise to colistin resistance: the role of ISL3 on plasmids. Int J Antimicrob Agents, 51(2), 260-265.
  76. Peker N, Rossen JWA, Deurenberg RH, Langereis PC, Raangs EGC, Kluytmans JA, Friedrich AW, Veenemans J, Sinha B (2018). Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis. Microorganisms, 6(1).
  77. Pirii LE, Friedrich AW, Rossen JWA, Vogels W, Beerthuizen GIJM, Nieuwenhuis MK, Kooistra-Smid AMD, Bathoorn E (2017). Extensive colonization with carbapenemase-producing microorganisms in Romanian burn patients: infectious consequences from the Colectiv fire disaster. Eur J Clin Microbiol Infect Dis, 37(1), 175-183.
  78. Zhou K, Yu W, Cao X, Shen P, Lu H, Luo Q, Rossen JWA, Xiao Y (2017). Characterization of the population structure, drug resistance mechanisms and plasmids of the community-associated Enterobacter cloacae complex in China. J Antimicrob Chemother, 73(1), 66-76.
  79. Gabarrini G, Palma Medina LM, Stobernack T, Prins RC, du Teil Espina M, Kuipers J, Chlebowicz MA, Rossen JWA, van Winkelhoff AJ, van Dijl JM (2018). There's no place like OM: Vesicular sorting and secretion of the peptidylarginine deiminase of Porphyromonas gingivalis. Virulence, 9(1), 456-464.
  80. de Vos MGJ, de Visser JAGM, Rossen JWA, Zwaan BJ (2018). [Polymicrobial infections: ecosystems with special properties]. Ned Tijdschr Geneeskd, 162, D2224.
  81. Nepal S, Bonn F, Grasso S, Stobernack T, de Jong A, Zhou K, Wedema R, Rosema S, Becher D, Otto A, Rossen JW, van Dijl JM, Bathoorn E (2018). An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae. Virulence, 9(1), 1377-1389.
  82. Zhou K, Yu W, Shen P, Lu H, Wang B, Rossen JWA, Xiao Y (2017). A novel Tn1696-like composite transposon (Tn6404) harboring bla IMP-4 in a Klebsiella pneumoniae isolate carrying a rare ESBL gene bla SFO-1. Sci Rep, 7(1), 17321.
  83. Amissah NA, Buultjens AH, Ablordey A, van Dam L, Opoku-Ware A, Baines SL, Bulach D, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, Seemann T, van Dijl JM, Stienstra Y, Stinear TP, Rossen JW (2017). Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings. Front Microbiol, 8, 1906.
  84. Zhou X, Garca-Cobos S, Ruijs GJHM, Kampinga GA, Arends JP, Borst DM, Mller LV, Holman ND, Schuurs TA, Bruijnesteijn van Coppenraet LE, Weel JF, van Zeijl JH, Kck R, Rossen JWA, Friedrich AW (2017). Epidemiology of Extended-Spectrum β-Lactamase-Producing E. coli and Vancomycin-Resistant Enterococci in the Northern Dutch-German Cross-Border Region. Front Microbiol, 8, 1914.
  85. Moran-Gilad J, Rokney A, Danino D, Ferdous M, Alsana F, Baum M, Dukhan L, Agmon V, Anuka E, Valinsky L, Yishay R, Grotto I, Rossen JWA, Gdalevich M (2017). Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery. Epidemiol Infect, 145(14), 2998-3006.
  86. Glasner C, de Goffau MC, van Timmeren MM, Schulze ML, Jansen B, Tavakol M, van Wamel WJB, Stegeman CA, Kallenberg CGM, Arends JP, Rossen JW, Heeringa P, van Dijl JM (2017). Genetic loci of Staphylococcus aureus associated with anti-neutrophil cytoplasmic autoantibody (ANCA)-associated vasculitides. Sci Rep, 7(1), 12211.
  87. Seerangaiyan K, van Winkelhoff AJ, Harmsen HJM, Rossen JWA, Winkel EG (2017). The tongue microbiome in healthy subjects and patients with intra-oral halitosis. J Breath Res, 11(3), 036010.
  88. Souverein D, Euser SM, van der Reijden WA, Herpers BL, Kluytmans J, Rossen JWA, Den Boer JW (2017). Clinical sensitivity and specificity of the Check-Points Check-Direct ESBL Screen for BD MAX, a real-time PCR for direct ESBL detection from rectal swabs. J Antimicrob Chemother, 72(9), 2512-2518.
  89. Schuster S, Vavra M, Schweigger TM, Rossen JWA, Matsumura Y, Kern WV (2017). Contribution of AcrAB-TolC to multidrug resistance in an Escherichia coli sequence type 131 isolate. Int J Antimicrob Agents, 50(3), 477-481.
  90. Amissah NA, van Dam L, Ablordey A, Ampomah OW, Prah I, Tetteh CS, van der Werf TS, Friedrich AW, Rossen JW, van Dijl JM, Stienstra Y (2017). Epidemiology of Staphylococcus aureus in a burn unit of a tertiary care center in Ghana. PLoS One, 12(7), e0181072.
  91. Wijnsma KL, Schijvens AM, Rossen JWA, Kooistra-Smid AMDM, Schreuder MF, van de Kar NCAJ (2017). Unusual severe case of hemolytic uremic syndrome due to Shiga toxin 2d-producing E. coli O80:H2. Pediatr Nephrol, 32(7), 1263-1268.
  92. Souverein D, Euser SM, Herpers BL, Hattink C, Houtman P, Popma A, Kluytmans J, Rossen JWA, Den Boer JW (2017). No nosocomial transmission under standard hygiene precautions in short term contact patients in case of an unexpected ESBL or Q&A E. coli positive patient: a one-year prospective cohort study within three regional hospitals. Antimicrob Resist Infect Control, 6, 69.
  93. Sabat AJ, van Zanten E, Akkerboom V, Wisselink G, van Slochteren K, de Boer RF, Hendrix R, Friedrich AW, Rossen JWA, Kooistra-Smid AMDM (2017). Targeted next-generation sequencing of the 16S-23S rRNA region for culture-independent bacterial identification - increased discrimination of closely related species. Sci Rep, 7(1), 3434.
  94. Amissah NA, Chlebowicz MA, Ablordey A, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, van Dijl JM, Stienstra Y, Rossen JW (2017). Virulence potential of Staphylococcus aureus isolates from Buruli ulcer patients. Int J Med Microbiol, 307(4-5), 223-232.
  95. Deurenberg RH, Bathoorn E, Chlebowicz MA, Couto N, Ferdous M, Garca-Cobos S, Kooistra-Smid AMD, Raangs EC, Rosema S, Veloo ACM, Zhou K, Friedrich AW, Rossen JWA (2017). Reprint of "Application of next generation sequencing in clinical microbiology and infection prevention". J Biotechnol, 250, 2-10.
  96. Pichler C, Bchsel M, Rossen JW, Vavra M, Reuter S, Kern WV, Thimme R, Mischnik A (2017). First report of invasive liver abscess syndrome with endophthalmitis caused by a K2 serotype ST2398 hypervirulent Klebsiella pneumoniae in Germany, 2016. New Microbes New Infect, 17, 77-80.
  97. Mellmann A, Andersen PS, Bletz S, Friedrich AW, Kohl TA, Lilje B, Niemann S, Prior K, Rossen JW, Harmsen D (2017). High Interlaboratory Reproducibility and Accuracy of Next-Generation-Sequencing-Based Bacterial Genotyping in a Ring Trial. J Clin Microbiol, 55(3), 908-913.
  98. Smit LAM, Boender GJ, de Steenhuijsen Piters WAA, Hagenaars TJ, Huijskens EGW, Rossen JWA, Koopmans M, Nodelijk G, Sanders EAM, Yzermans J, Bogaert D, Heederik D (2017). Increased risk of pneumonia in residents living near poultry farms: does the upper respiratory tract microbiota play a role? Pneumonia (Nathan), 9, 3.
  99. Deurenberg RH, Bathoorn E, Chlebowicz MA, Couto N, Ferdous M, Garca-Cobos S, Kooistra-Smid AM, Raangs EC, Rosema S, Veloo AC, Zhou K, Friedrich AW, Rossen JW (2016). Application of next generation sequencing in clinical microbiology and infection prevention. J Biotechnol, 243, 16-24.
  100. Zhou K, Yu W, Bonnet R, Cattoir V, Shen P, Wang B, Rossen JW, Xiao Y (2017). Emergence of a novel Enterobacter kobei clone carrying chromosomal-encoded CTX-M-12 with diversified pathogenicity in northeast China. New Microbes New Infect, 17, 7-10.
  101. Kluytmans-van den Bergh MF, Rossen JW, Bruijning-Verhagen PC, Bonten MJ, Friedrich AW, Vandenbroucke-Grauls CM, Willems RJ, Kluytmans JA (2016). Whole-Genome Multilocus Sequence Typing of Extended-Spectrum-Beta-Lactamase-Producing Enterobacteriaceae. J Clin Microbiol, 54(12), 2919-2927.
  102. van den Beld MJC, Friedrich AW, van Zanten E, Reubsaet FAG, Kooistra-Smid MAMD, Rossen JWA, participating Medical Microbiological Laboratories (2016). Multicenter evaluation of molecular and culture-dependent diagnostics for Shigella species and Entero-invasive Escherichia coli in the Netherlands. J Microbiol Methods, 131, 10-15.
  103. Ferdous M, Kooistra-Smid AM, Zhou K, Rossen JW, Friedrich AW (2016). Virulence, Antimicrobial Resistance Properties and Phylogenetic Background of Non-H7 Enteropathogenic Escherichia coli O157. Front Microbiol, 7, 1540.
  104. Ang CW, Bouts AH, Rossen JW, Van der Kuip M, Van Heerde M, Bkenkamp A (2016). Diarrhea, Urosepsis and Hemolytic Uremic Syndrome Caused by the Same Heteropathogenic Escherichia coli Strain. Pediatr Infect Dis J, 35(9), 1045-7.
  105. Sassmannshausen R, Deurenberg RH, Kck R, Hendrix R, Jurke A, Rossen JW, Friedrich AW (2016). MRSA Prevalence and Associated Risk Factors among Health-Care Workers in Non-outbreak Situations in the Dutch-German EUREGIO. Front Microbiol, 7, 1273.
  106. de Crom SC, Rossen JW, van Furth AM, Obihara CC (2016). Enterovirus and parechovirus infection in children: a brief overview. Eur J Pediatr, 175(8), 1023-9.
  107. Ferdous M, Friedrich AW, Grundmann H, de Boer RF, Croughs PD, Islam MA, Kluytmans-van den Bergh MF, Kooistra-Smid AM, Rossen JW (2016). Molecular characterization and phylogeny of Shiga toxin-producing Escherichia coli isolates obtained from two Dutch regions using whole genome sequencing. Clin Microbiol Infect, 22(7), 642.e1-9.
  108. Bathoorn E, Tsioutis C, da Silva Voorham JM, Scoulica EV, Ioannidou E, Zhou K, Rossen JW, Gikas A, Friedrich AW, Grundmann H (2016). Emergence of pan-resistance in KPC-2 carbapenemase-producing Klebsiella pneumoniae in Crete, Greece: a close call. J Antimicrob Chemother, 71(5), 1207-12.
  109. de Crom SC, Rossen JW, de Moor RA, Veldkamp EJ, van Furth AM, Obihara CC (2016). Prospective assessment of clinical symptoms associated with enterovirus and parechovirus genotypes in a multicenter study in Dutch children. J Clin Virol, 77, 15-20.
  110. Souverein D, Euser SM, Herpers BL, Diederen B, Houtman P, van Seventer M, van Ess I, Kluytmans J, Rossen JW, Den Boer JW (2016). Prevalence, risk factors and molecular epidemiology of highly resistant gram negative rods in hospitalized patients in the Dutch region Kennemerland. Antimicrob Resist Infect Control, 5, 8.
  111. Huijskens EG, Smit LA, Rossen JW, Heederik D, Koopmans M (2015). Evaluation of Patients with Community-Acquired Pneumonia Caused by Zoonotic Pathogens in an Area with a High Density of Animal Farms. Zoonoses Public Health, 63(2), 160-6.
  112. Zhou K, Lokate M, Deurenberg RH, Tepper M, Arends JP, Raangs EG, Lo-Ten-Foe J, Grundmann H, Rossen JW, Friedrich AW (2016). Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae. Sci Rep, 6, 20840.
  113. Willemsen I, van Esser J, Kluytmans-van den Bergh M, Zhou K, Rossen JW, Verhulst C, Verduin K, Kluytmans J (2015). Retrospective identification of a previously undetected clinical case of OXA-48-producing K. pneumoniae and E. coli: the importance of adequate detection guidelines. Infection, 44(1), 107-10.
  114. de Steenhuijsen Piters WA, Huijskens EG, Wyllie AL, Biesbroek G, van den Bergh MR, Veenhoven RH, Wang X, Trzciski K, Bonten MJ, Rossen JW, Sanders EA, Bogaert D (2015). Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients. ISME J, 10(1), 97-108.
  115. Woodman S, Gibson AJ, Garca AR, Contreras GS, Rossen JW, Werling D, Offord V (2015). Structural characterisation of Toll-like receptor 1 (TLR1) and Toll-like receptor 6 (TLR6) in elephant and harbor seals. Vet Immunol Immunopathol, 169, 10-4.
  116. Kluytmans-van den Bergh MF, Huizinga P, Bonten MJ, Bos M, De Bruyne K, Friedrich AW, Rossen JW, Savelkoul PH, Kluytmans JA (2015). Presence of mcr-1-positive Enterobacteriaceae in retail chicken meat but not in humans in the Netherlands since 2009. Euro Surveill, 21(9), 30149.
  117. Ferdous M, Zhou K, de Boer RF, Friedrich AW, Kooistra-Smid AM, Rossen JW (2015). Comprehensive Characterization of Escherichia coli O104:H4 Isolated from Patients in the Netherlands. Front Microbiol, 6, 1348.
  118. Zhou K, Lokate M, Deurenberg RH, Arends J, Lo-Ten Foe J, Grundmann H, Rossen JW, Friedrich AW (2015). Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427). Front Microbiol, 6, 1250.
  119. Ferdous M, Zhou K, Mellmann A, Morabito S, Croughs PD, de Boer RF, Kooistra-Smid AM, Rossen JW, Friedrich AW (2015). Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing. J Clin Microbiol, 53(11), 3530-8.
  120. Krger A, Lucchesi PM, Sanso AM, Etcheverra AI, Bustamante AV, Burgn J, Fernndez L, Fernndez D, Leotta G, Friedrich AW, Padola NL, Rossen JW (2015). Genetic characterization of Shiga toxin-producing Escherichia coli O26:H11 strains isolated from animal, food, and clinical samples. Front Cell Infect Microbiol, 5, 74.
  121. Gabarrini G, de Smit M, Westra J, Brouwer E, Vissink A, Zhou K, Rossen JW, Stobernack T, van Dijl JM, van Winkelhoff AJ (2015). The peptidylarginine deiminase gene is a conserved feature of Porphyromonas gingivalis. Sci Rep, 5, 13936.
  122. Amissah NA, Chlebowicz MA, Ablordey A, Sabat AJ, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, van Dijl JM, Rossen JW, Stienstra Y (2015). Molecular Characterization of Staphylococcus aureus Isolates Transmitted between Patients with Buruli Ulcer. PLoS Negl Trop Dis, 9(9), e0004049.
  123. Weterings V, Zhou K, Rossen JW, van Stenis D, Thewessen E, Kluytmans J, Veenemans J (2015). An outbreak of colistin-resistant Klebsiella pneumoniae carbapenemase-producing Klebsiella pneumoniae in the Netherlands (July to December 2013), with inter-institutional spread. Eur J Clin Microbiol Infect Dis, 34(8), 1647-55.
  124. Garca-Cobos S, Kck R, Mellmann A, Frenzel J, Friedrich AW, Rossen JW (2015). Molecular Typing of Enterobacteriaceae from Pig Holdings in North-Western Germany Reveals Extended- Spectrum and AmpC β-Lactamases Producing but no Carbapenem Resistant Ones. PLoS One, 10(7), e0134533.
  125. Nijhuis RH, Oueslati S, Zhou K, Bosboom RW, Rossen JW, Naas T (2015). OXY-2-15, a novel variant showing increased ceftazidime hydrolytic activity. J Antimicrob Chemother, 70(5), 1429-33.
  126. Zhou K, Ferdous M, de Boer RF, Kooistra-Smid AM, Grundmann H, Friedrich AW, Rossen JW (2014). The mosaic genome structure and phylogeny of Shiga toxin-producing Escherichia coli O104:H4 is driven by short-term adaptation. Clin Microbiol Infect, 21(5), 468.e7-18.
  127. de Boer RF, Ferdous M, Ott A, Scheper HR, Wisselink GJ, Heck ME, Rossen JW, Kooistra-Smid AM (2015). Assessing the public health risk of Shiga toxin-producing Escherichia coli by use of a rapid diagnostic screening algorithm. J Clin Microbiol, 53(5), 1588-98.
  128. Mller J, Voss A, Kck R, Sinha B, Rossen JW, Kaase M, Mielke M, Daniels-Haardt I, Jurke A, Hendrix R, Kluytmans JA, Kluytmans-van den Bergh MF, Pulz M, Herrmann J, Kern WV, Wendt C, Friedrich AW (2015). Cross-border comparison of the Dutch and German guidelines on multidrug-resistant Gram-negative microorganisms. Antimicrob Resist Infect Control, 4, 7.
  129. Amissah NA, Glasner C, Ablordey A, Tetteh CS, Kotey NK, Prah I, van der Werf TS, Rossen JW, van Dijl JM, Stienstra Y (2015). Genetic diversity of Staphylococcus aureus in Buruli ulcer. PLoS Negl Trop Dis, 9(2), e0003421.
  130. Glasner C, van Timmeren MM, Stobernack T, Omansen TF, Raangs EC, Rossen JW, de Goffau MC, Arends JP, Kampinga GA, Koedijk DG, Neef J, Buist G, Tavakol M, van Wamel WJ, Rutgers A, Stegeman CA, Kallenberg CG, Heeringa P, van Dijl JM (2015). Low anti-staphylococcal IgG responses in granulomatosis with polyangiitis patients despite long-term Staphylococcus aureus exposure. Sci Rep, 5, 8188.
  131. Bathoorn E, Rossen JW, Lokate M, Friedrich AW, Hammerum AM (2015). Isolation of an NDM-5-producing ST16 Klebsiella pneumoniae from a Dutch patient without travel history abroad, August 2015. Euro Surveill, 20(41).
  132. Zhou X, Arends JP, Kampinga GA, Ahmad HM, Dijkhuizen B, van Barneveld P, Rossen JW, Friedrich AW (2014). Evaluation of the Xpert vanA/vanB assay using enriched inoculated broths for direct detection of vanB vancomycin-resistant Enterococci. J Clin Microbiol, 52(12), 4293-7.
  133. de Waal YC, Winkel EG, Raangs GC, van der Vusse ML, Rossen JW, van Winkelhoff AJ (2014). Changes in oral microflora after full-mouth tooth extraction: a prospective cohort study. J Clin Periodontol, 41(10), 981-9.
  134. Kck R, Winner K, Schaumburg F, Jurke A, Rossen JW, Friedrich AW (2014). Admission prevalence and acquisition of nasal carriage of meticillin-resistant Staphylococcus aureus (MRSA) in German rehabilitation centres. J Hosp Infect, 87(2), 115-8.
  135. Huijskens EG, Rossen JW, Kluytmans JA, van der Zanden AG, Koopmans M (2013). Evaluation of yield of currently available diagnostics by sample type to optimize detection of respiratory pathogens in patients with a community-acquired pneumonia. Influenza Other Respir Viruses, 8(2), 243-9.
  136. Huijskens EGW, Koopmans M, Palmen FMH, van Erkel AJM, Mulder PGH, Rossen JWA (2013). The value of signs and symptoms in differentiating between bacterial, viral and mixed aetiology in patients with community-acquired pneumonia. J Med Microbiol, 63(Pt 3), 441-452.
  137. Nunes MC, Kuschner Z, Rabede Z, Madimabe R, Van Niekerk N, Moloi J, Kuwanda L, Rossen JW, Klugman KP, Adrian PV, Madhi SA (2014). Clinical epidemiology of bocavirus, rhinovirus, two polyomaviruses and four coronaviruses in HIV-infected and HIV-uninfected South African children. PLoS One, 9(2), e86448.
  138. Akkerman OW, van der Werf TS, de Boer M, de Beer JL, Rahim Z, Rossen JW, van Soolingen D, Kerstjens HA, van der Zanden AG (2013). Comparison of 14 molecular assays for detection of Mycobacterium tuberculosis complex in bronchoalveolar lavage fluid. J Clin Microbiol, 51(11), 3505-11.
  139. Bathoorn E, Friedrich AW, Zhou K, Arends JP, Borst DM, Grundmann H, Rossen JW (2013). Latent introduction to the Netherlands of multiple antibiotic resistance including NDM-1 after hospitalisation in Egypt, August 2013. Euro Surveill, 18(42).
  140. Geelen TH, Rossen JW, Beerens AM, Poort L, Morr SA, Ritmeester WS, van Kruchten HE, van de Pas MM, Savelkoul PH (2013). Performance of cobas® 4800 and m2000 real-time™ assays for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in rectal and self-collected vaginal specimen. Diagn Microbiol Infect Dis, 77(2), 101-5.
  141. de Crom SC, Obihara CC, de Moor RA, Veldkamp EJ, van Furth AM, Rossen JW (2013). Prospective comparison of the detection rates of human enterovirus and parechovirus RT-qPCR and viral culture in different pediatric specimens. J Clin Virol, 58(2), 449-54.
  142. Jurke A, Kock R, Becker K, Thole S, Hendrix R, Rossen J, Daniels-Haardt I, Friedrich A (2013). Reduction of the nosocomial meticillin-resistant Staphylococcus aureus incidence density by a region-wide search and follow-strategy in forty German hospitals of the EUREGIO, 2009 to 2011. Euro Surveill, 18(36), pii=20579.
  143. van der Gugten AC, van der Zalm MM, Uiterwaal CS, Wilbrink B, Rossen JW, van der Ent CK (2013). Human rhinovirus and wheezing: short and long-term associations in children. Pediatr Infect Dis J, 32(8), 827-33.
  144. Huijskens EG, van Erkel AJ, Palmen FM, Buiting AG, Kluytmans JA, Rossen JW (2012). Viral and bacterial aetiology of community-acquired pneumonia in adults. Influenza Other Respir Viruses, 7(4), 567-73.
  145. Jaramillo-Gutierrez G, Benschop KS, Claas EC, de Jong AS, van Loon AM, Pas SD, Pontesilli O, Rossen JW, Swanink CM, Thijsen S, van der Zanden AG, van der Avoort HG, Koopmans MP, Meijer A (2013). September through October 2010 multi-centre study in the Netherlands examining laboratory ability to detect enterovirus 68, an emerging respiratory pathogen. J Virol Methods, 190(1-2), 53-62.
  146. Van Lint P, Rossen JW, Vermeiren S, Ver Elst K, Weekx S, Van Schaeren J, Jeurissen A (2013). Detection of Giardia lamblia, Cryptosporidium spp. and Entamoeba histolytica in clinical stool samples by using multiplex real-time PCR after automated DNA isolation. Acta Clin Belg, 68(3), 188-92.
  147. Niesters HG, Rossen JW, van der Avoort H, Baas D, Benschop K, Claas EC, Kroneman A, van Maarseveen N, Pas S, van Pelt W, Rahamat-Langendoen JC, Schuurman R, Vennema H, Verhoef L, Wolthers K, Koopmans M (2013). Laboratory-based surveillance in the molecular era: the TYPENED model, a joint data-sharing platform for clinical and public health laboratories. Euro Surveill, 18(4), 20387.
  148. Bergmans AM, Rossen JW (2012). Detection of Bartonella spp. DNA in clinical specimens using an internally controlled real-time PCR assay. Methods Mol Biol, 943, 217-28.
  149. Huijskens EG, Reimerink J, Mulder PG, van Beek J, Meijer A, de Bruin E, Friesema I, de Jong MD, Rimmelzwaan GF, Peeters MF, Rossen JW, Koopmans M (2013). Profiling of humoral response to influenza A(H1N1)pdm09 infection and vaccination measured by a protein microarray in persons with and without history of seasonal vaccination. PLoS One, 8(1), e54890.
  150. Huijskens EG, Biesmans RC, Buiting AG, Obihara CC, Rossen JW (2012). Diagnostic value of respiratory virus detection in symptomatic children using real-time PCR. Virol J, 9, 276.
  151. de Crom SC, van Furth MA, Peeters MF, Rossen JW, Obihara CC (2011). Characteristics of pediatric patients with enterovirus meningitis and no cerebral fluid pleocytosis. Eur J Pediatr, 171(5), 795-800.
  152. Tilburg JJ, Rossen JW, van Hannen EJ, Melchers WJ, Hermans MH, van de Bovenkamp J, Roest HJ, de Bruin A, Nabuurs-Franssen MH, Horrevorts AM, Klaassen CH (2011). Genotypic diversity of Coxiella burnetii in the 2007-2010 Q fever outbreak episodes in The Netherlands. J Clin Microbiol, 50(3), 1076-8.
  153. Dijkman R, Jebbink MF, Gaunt E, Rossen JW, Templeton KE, Kuijpers TW, van der Hoek L (2011). The dominance of human coronavirus OC43 and NL63 infections in infants. J Clin Virol, 53(2), 135-9.
  154. de Crom SC, Obihara CC, van Loon AM, Argilagos-Alvarez AA, Peeters MF, van Furth AM, Rossen JW (2011). Detection of enterovirus RNA in cerebrospinal fluid: comparison of two molecular assays. J Virol Methods, 179(1), 104-7.
  155. van den Bergh MR, Biesbroek G, Rossen JW, de Steenhuijsen Piters WA, Bosch AA, van Gils EJ, Wang X, Boonacker CW, Veenhoven RH, Bruin JP, Bogaert D, Sanders EA (2012). Associations between pathogens in the upper respiratory tract of young children: interplay between viruses and bacteria. PLoS One, 7(10), e47711.
  156. Huijskens E, Rossen J, Mulder P, van Beek R, van Vugt H, Verbakel J, Rimmelzwaan G, Koopmans M, Peeters M (2011). Immunogenicity, boostability, and sustainability of the immune response after vaccination against Influenza A virus (H1N1) 2009 in a healthy population. Clin Vaccine Immunol, 18(9), 1401-5.
  157. van de Pol AC, Wolfs TF, Tacke CE, Uiterwaal CS, Forster J, van Loon AM, Kimpen JL, Rossen JW, Jansen NJ (2010). Impact of PCR for respiratory viruses on antibiotic use: theory and practice. Pediatr Pulmonol, 46(5), 428-34.
  158. Rondy M, Koopmans M, Rotsaert C, Van Loon T, Beljaars B, Van Dijk G, Siebenga J, Svraka S, Rossen JW, Teunis P, Van Pelt W, Verhoef L (2010). Norovirus disease associated with excess mortality and use of statins: a retrospective cohort study of an outbreak following a pilgrimage to Lourdes. Epidemiol Infect, 139(3), 453-63.
  159. Bogaert D, Keijser B, Huse S, Rossen J, Veenhoven R, van Gils E, Bruin J, Montijn R, Bonten M, Sanders E (2011). Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis. PLoS One, 6(2), e17035.
  160. Tilburg JJ, Horrevorts AM, Peeters MF, Klaassen CH, Rossen JW (2010). Identification by genotyping of a commercial antigen preparation as the source of a laboratory contamination with Coxiella burnetii and as an unexpected rich source of control DNA. J Clin Microbiol, 49(1), 383-4.
  161. Tilburg JJ, Melchers WJ, Pettersson AM, Rossen JW, Hermans MH, van Hannen EJ, Nabuurs-Franssen MH, de Vries MC, Horrevorts AM, Klaassen CH (2010). Interlaboratory evaluation of different extraction and real-time PCR methods for detection of Coxiella burnetii DNA in serum. J Clin Microbiol, 48(11), 3923-7.
  162. van de Pol AC, Wolfs TF, van Loon AM, Tacke CE, Viveen MC, Jansen NJ, Kimpen JL, Rossen JW, Coenjaerts FE (2010). Molecular quantification of respiratory syncytial virus in respiratory samples: reliable detection during the initial phase of infection. J Clin Microbiol, 48(10), 3569-74.
  163. Houben ML, Coenjaerts FE, Rossen JW, Belderbos ME, Hofland RW, Kimpen JL, Bont L (2010). Disease severity and viral load are correlated in infants with primary respiratory syncytial virus infection in the community. J Med Virol, 82(7), 1266-71.
  164. Versluys AB, Rossen JW, van Ewijk B, Schuurman R, Bierings MB, Boelens JJ (2010). Strong association between respiratory viral infection early after hematopoietic stem cell transplantation and the development of life-threatening acute and chronic alloimmune lung syndromes. Biol Blood Marrow Transplant, 16(6), 782-91.
  165. Bialasiewicz S, Rockett R, Whiley DW, Abed Y, Allander T, Binks M, Boivin G, Cheng AC, Chung JY, Ferguson PE, Gilroy NM, Leach AJ, Lindau C, Rossen JW, Sorrell TC, Nissen MD, Sloots TP (2010). Whole-genome characterization and genotyping of global WU polyomavirus strains. J Virol, 84(12), 6229-34.
  166. van de Pol AC, Rossen JW, Wolfs TF, Breteler EK, Kimpen JL, van Loon AM, Jansen NJ (2009). Transmission of respiratory syncytial virus at the paediatric intensive-care unit: a prospective study using real-time PCR. Clin Microbiol Infect, 16(5), 488-90.
  167. Pas S, Rossen JW, Schoener D, Thamke D, Pettersson A, Babiel R, Schutten M (2010). Performance evaluation of the new Roche Cobas AmpliPrep/Cobas TaqMan HIV-1 test version 2.0 for quantification of human immunodeficiency virus type 1 RNA. J Clin Microbiol, 48(4), 1195-200.
  168. Lukens MV, van de Pol AC, Coenjaerts FE, Jansen NJ, Kamp VM, Kimpen JL, Rossen JW, Ulfman LH, Tacke CE, Viveen MC, Koenderman L, Wolfs TF, van Bleek GM (2009). A systemic neutrophil response precedes robust CD8(+) T-cell activation during natural respiratory syncytial virus infection in infants. J Virol, 84(5), 2374-83.
  169. van Asten L, van der Lubben M, van den Wijngaard C, van Pelt W, Verheij R, Jacobi A, Overduin P, Meijer A, Luijt D, Claas E, Hermans M, Melchers W, Rossen J, Schuurman R, Wolffs P, Boucher C, Schirm J, Kroes L, Leenders S, Galama J, Peeters M, van Loon A, Stobberingh E, Schutten M, Koopmans M (2009). Strengthening the diagnostic capacity to detect Bio Safety Level 3 organisms in unusual respiratory viral outbreaks. J Clin Virol, 45(3), 185-90.
  170. Meijer A, Beerens A, Claas E, Hermans M, de Jong A, Molenkamp R, Niesters H, Overduin P, Rossen J, Schuurman R, Wolffs P, Fouchier R, Osterhaus A, Schutten M, Koopmans M (2009). Preparing the outbreak assistance laboratory network in the Netherlands for the detection of the influenza virus A(H1N1) variant. J Clin Virol, 45(3), 179-84.
  171. van de Pol AC, Wolfs TF, Jansen NJ, Kimpen JL, van Loon AM, Rossen JW (2009). Human bocavirus and KI/WU polyomaviruses in pediatric intensive care patients. Emerg Infect Dis, 15(3), 454-7.
  172. van der Zalm MM, Rossen JW, van Ewijk BE, Wilbrink B, van Esch PC, Wolfs TF, van der Ent CK (2008). Prevalence and pathogenicity of WU and KI polyomaviruses in children, the Netherlands. Emerg Infect Dis, 14(11), 1787-9.
  173. Heidema J, Rossen JW, Lukens MV, Ketel MS, Scheltens E, Kranendonk ME, van Maren WW, van Loon AM, Otten HG, Kimpen JL, van Bleek GM (2008). Dynamics of human respiratory virus-specific CD8+ T cell responses in blood and airways during episodes of common cold. J Immunol, 181(8), 5551-9.
  174. Bosch BJ, Rossen JW, Bartelink W, Zuurveen SJ, de Haan CA, Duquerroy S, Boucher CA, Rottier PJ (2007). Coronavirus escape from heptad repeat 2 (HR2)-derived peptide entry inhibition as a result of mutations in the HR1 domain of the spike fusion protein. J Virol, 82(5), 2580-5.
  175. van de Pol AC, van Loon AM, Wolfs TF, Jansen NJ, Nijhuis M, Breteler EK, Schuurman R, Rossen JW (2007). Increased detection of respiratory syncytial virus, influenza viruses, parainfluenza viruses, and adenoviruses with real-time PCR in samples from patients with respiratory symptoms. J Clin Microbiol, 45(7), 2260-2.
  176. Raaben M, Einerhand AW, Taminiau LJ, van Houdt M, Bouma J, Raatgeep RH, Bller HA, de Haan CA, Rossen JW (2007). Cyclooxygenase activity is important for efficient replication of mouse hepatitis virus at an early stage of infection. Virol J, 4, 55.
  177. van Woensel JB, Bos AP, Lutter R, Rossen JW, Schuurman R (2006). Absence of human metapneumovirus co-infection in cases of severe respiratory syncytial virus infection. Pediatr Pulmonol, 41(9), 872-4.
  178. van de Pol AC, Wolfs TF, Jansen NJ, van Loon AM, Rossen JW (2005). Diagnostic value of real-time polymerase chain reaction to detect viruses in young children admitted to the paediatric intensive care unit with lower respiratory tract infection. Crit Care, 10(2), R61.
  179. Hendriks J, Xiao Y, Rossen JW, van der Sluijs KF, Sugamura K, Ishii N, Borst J (2005). During viral infection of the respiratory tract, CD27, 4-1BB, and OX40 collectively determine formation of CD8+ memory T cells and their capacity for secondary expansion. J Immunol, 175(3), 1665-76.
  180. Rossen JW, Bouma J, Raatgeep RH, Bller HA, Einerhand AW (2004). Inhibition of cyclooxygenase activity reduces rotavirus infection at a postbinding step. J Virol, 78(18), 9721-30.
  181. Boshuizen JA, Rossen JW, Sitaram CK, Kimenai FF, Simons-Oosterhuis Y, Laffeber C, Bller HA, Einerhand AW (2004). Rotavirus enterotoxin NSP4 binds to the extracellular matrix proteins laminin-beta3 and fibronectin. J Virol, 78(18), 10045-53.
  182. Dekker J, Rossen JW, Bller HA, Einerhand AW (2002). The MUC family: an obituary. Trends Biochem Sci, 27(3), 126-31.
  183. Rossen JW, Kouame J, Goedheer AJ, Vennema H, Rottier PJ (2001). Feline and canine coronaviruses are released from the basolateral side of polarized epithelial LLC-PK1 cells expressing the recombinant feline aminopeptidase-N cDNA. Arch Virol, 146(4), 791-9.
  184. Godeke GJ, de Haan CA, Rossen JW, Vennema H, Rottier PJ (2000). Assembly of spikes into coronavirus particles is mediated by the carboxy-terminal domain of the spike protein. J Virol, 74(3), 1566-71.
  185. Rossen JW, de Beer R, Godeke GJ, Raamsman MJ, Horzinek MC, Vennema H, Rottier PJ (1998). The viral spike protein is not involved in the polarized sorting of coronaviruses in epithelial cells. J Virol, 72(1), 497-503.
  186. Rossen JW, Strous GJ, Horzinek MC, Rottier PJ (1997). Mouse hepatitis virus strain A59 is released from opposite sides of different epithelial cell types. J Gen Virol, 78 ( Pt 1), 61-9.
  187. Rossen JW, Bekker CP, Strous GJ, Horzinek MC, Dveksler GS, Holmes KV, Rottier PJ (1996). A murine and a porcine coronavirus are released from opposite surfaces of the same epithelial cells. Virology, 224(1), 345-51.
  188. Vennema H, Godeke GJ, Rossen JW, Voorhout WF, Horzinek MC, Opstelten DJ, Rottier PJ (1996). Nucleocapsid-independent assembly of coronavirus-like particles by co-expression of viral envelope protein genes. EMBO J, 15(8), 2020-8.
  189. Rossen JW, Horzinek MC, Rottier PJ (1995). Coronavirus infection of polarized epithelial cells. Trends Microbiol, 3(12), 486-90.
  190. Rossen JW, Voorhout WF, Horzinek MC, van der Ende A, Strous GJ, Rottier PJ (1995). MHV-A59 enters polarized murine epithelial cells through the apical surface but is released basolaterally. Virology, 210(1), 54-66.
  191. Gagneten S, Gout O, Dubois-Dalcq M, Rottier P, Rossen J, Holmes KV (1995). Interaction of mouse hepatitis virus (MHV) spike glycoprotein with receptor glycoprotein MHVR is required for infection with an MHV strain that expresses the hemagglutinin-esterase glycoprotein. J Virol, 69(2), 889-95.
  192. Rossen JW, Bekker CP, Voorhout WF, Horzinek MC, Van der Ende A, Strous GJ, Rottier PJ (1995). Coronaviruses in polarized epithelial cells. Adv Exp Med Biol, 380, 135-8.
  193. Rossen JW, Bekker CP, Voorhout WF, Strous GJ, van der Ende A, Rottier PJ (1994). Entry and release of transmissible gastroenteritis coronavirus are restricted to apical surfaces of polarized epithelial cells. J Virol, 68(12), 7966-73.
  194. Strous GJ, van Kerkhof P, Verheijen C, Rossen JW, Liou W, Slot JW, Roelen CA, Schwartz AL (1994). Expression of functional growth hormone receptor in a mouse L cell line infected with recombinant vaccinia virus. Exp Cell Res, 211(2), 353-9.
  195. Vennema H, Rossen JW, Wesseling J, Horzinek MC, Rottier PJ (1993). Genomic organization and expression of the 3' end of the canine and feline enteric coronaviruses. Adv Exp Med Biol, 342, 11-6.
  196. Vennema H, Rossen JW, Wesseling J, Horzinek MC, Rottier PJ (1992). Genomic organization and expression of the 3' end of the canine and feline enteric coronaviruses. Virology, 191(1), 134-40.

Letter

  1. Schuele L, Fleres G, Strutzberg-Minder K, Schtze S, Lbert S, Lambrecht C, Harlizius J, Peter S, Rossen JWA, Couto N (2021). Detection of a small IncX4 plasmid carrying the mcr-1.1 gene in a pig oral fluid sample by shotgun metagenomic sequencing. [Letter to the editor]. J Glob Antimicrob Resist, 24, 205-206.
  2. Fleres G, Couto N, Schuele L, Chlebowicz MA, Mendes CI, van der Sluis LWM, Rossen JWA, Friedrich AW, Garca-Cobos S (2019). Detection of a novel mcr-5.4 gene variant in hospital tap water by shotgun metagenomic sequencing. [Letter to the editor]. J Antimicrob Chemother, 74(12), 3626-3628.
  3. Zhou K, Yu X, Zhou Y, Song J, Ji Y, Shen P, Rossen JWA, Xiao Y (2019). Detection of an In104-like integron carrying a blaIMP-34 gene in Enterobacter cloacae isolates co-producing IMP-34 and VIM-1. [Letter to the editor]. J Antimicrob Chemother, 74(9), 2812-2814.
  4. Gartzonika K, Rossen JWA, Sakkas H, Rosema S, Priavali E, Friedrich AW, Levidiotou S, Bathoorn E (2017). Identification of a KPC-9-producing Klebsiella pneumoniae ST258 cluster among KPC-2-producing isolates of an ongoing outbreak in Northwestern Greece: a retrospective study. [Letter to the editor]. Clin Microbiol Infect, 24(5), 558-560.
  5. Bonjak Z, Chlebowicz MA, Marekovi I, Rezo Vranje V, Rossen JW, Budimir A (2017). First report of OXA-48-producing Escherichia coli in Croatia and confirmed intergenic transfer of a plasmid-carrying blaOXA-48 from Klebsiella pneumoniae. [Letter to the editor]. Infect Dis (Lond), 50(4), 313-316.
  6. Dik JH, Poelman R, Friedrich AW, Niesters HGM, Rossen JWA, Sinha B (2017). Integrated Stewardship Model Comprising Antimicrobial, Infection Prevention, and Diagnostic Stewardship (AID Stewardship). [Letter to the editor]. J Clin Microbiol, 55(11), 3306-3307.
  7. Jurke A, Kck R, Becker K, Thole S, Hendrix R, Rossen J, Daniels-Haardt I, Friedrich AW (2013). Molecular epidemiology of meticillin-resistant Staphylococcus aureus (MRSA): think regionally but use globally uniform typing languages. [Letter to the editor]. Euro Surveill, 18(43).
  8. Huijskens EG, van Erkel AJ, Peeters MF, Rossen JW (2010). Human polyomavirus KI and WU in adults with community acquired pneumonia in The Netherlands, 2008-2009. [Letter to the editor]. J Clin Virol, 49(4), 306-7.

Other

  1. Campos ACC, Andrade NL, Ferdous M, Chlebowicz MA, Santos CC, Correal JCD, Lo Ten Foe JR, Rosa ACP, Damasco PV, Friedrich AW, Rossen JWA (2020). Corrigendum: Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil. Front Microbiol (11, p. 599031). Switzerland.
  2. Greub G, Palagi PM, Dylus D, Egli A, Pillonel T, Rossen JWA, Seth-Smith HMB, Lebrand A, ESGMD Study Group (2020). Clinical bioinformatics for microbial genomics and metagenomics: an ESCMID Postgraduate Technical Workshop. Microbes Infect (22(10), pp. 626-634). France.
  3. Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carrio JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW (2019). Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens. Sci Rep (9(1), p. 6406). England.
  4. Motro Y, Carrio JA, Friedrich AW, Rossen JWA, Moran-Gilad J (2018). ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab. Microbes Infect (20(5), pp. 275-280). France.
  5. Greub G, Moran-Gilad J, Rossen J, Egli A, ESCMID Study Group for Genomic and Molecular Diagnostics ESGMD (2017). ESCMID postgraduate education course: applications of MALDI-TOF mass spectrometry in clinical microbiology. Microbes Infect (19(9-10), pp. 433-442). France.