Lindsay T. Keegan

Lindsay T. Keegan, PhD

Languages spoken: English

Academic Information

Departments Primary - Internal Medicine , Adjunct - Family & Preventive Medicine , Adjunct - Population Health Sciences

Divisions: Epidemiology , Public Health

Lab

Education History

Postdoctoral Fellowship Johns Hopkins Bloomberg School of Public Health
 Postdoctoral Fellow
Doctoral Training McMaster University
 PhD
Undergraduate University of Florida
 BS
Undergraduate University of Florida
 BS

Selected Publications

Journal Article

  1. Bi, Q, Cummings, DAT, Reich, NG, Keegan, LT, Kaminsky, J, Salje, H, Clapham, H, Doungngern, P, Iamsirithaworn, S, Lessler, J (Submitted). Seasonal patterns of dengue incidence in Thailand across the urban-rural gradient. (Epub ahead of print) medRxiv.
  2. Horn AC, Shoemaker HE, Keegan LT (2024). The Effectiveness of Face Mask Mandates on COVID-19 Transmission in Utah. Public Health Rep, 333549241290676. (Read full article)
  3. Toth DJA, Sheets TR, Beams AB, Ahmed SM, Seegert N, Love J, Keegan LT, Samore MH (2024). Model-based estimates of age-structured SARS-CoV-2 epidemiology in households. BMC Public Health, 24(1), 2965. (Read full article)
  4. Mitchell C, Keegan LT, Le TTT, Khader K, Beams A, Samore MH, Toth DJA (2024). Importance of underlying mechanisms for interpreting relative risk of Clostridioides difficile infection among antibiotic-exposed patients in healthcare facilities. PLoS One, 19(8), e0306622. (Read full article)
  5. Beams A, Keegan LT, Adler FR, Samore MH, Khader K, Toth DJA (2022). Staphylococcus aureus Carrier Types are not Evidence of Population Heterogeneity. Am J Epidemiol, 192(3), 455-466. (Read full article)
  6. Cramer EY, Huang Y, Wang Y, Ray EL, Cornell M, Bracher J, Brennen A, Rivadeneira AJC, Gerding A, House K, Jayawardena D, Kanji AH, Khandelwal A, Le K, Mody V, Mody V, Niemi J, Stark A, Shah A, Wattanchit N, Zorn MW, Reich NG, US COVID-19 Forecast Hub Consortium (2022). The United States COVID-19 Forecast Hub dataset. Sci Data, 9(1), 462. (Read full article)
  7. Cramer EY, Ray EL, Lopez VK, Bracher J, Brennen A, Castro Rivadeneira AJ, Gerding A, Gneiting T, House KH, Huang Y, Jayawardena D, Kanji AH, Khandelwal A, Le K, Mhlemann A, Niemi J, Shah A, Stark A, Wang Y, Wattanachit N, Zorn MW, Gu Y, Jain S, Bannur N, Deva A, Kulkarni M, Merugu S, Raval A, Shingi S, Tiwari A, White J, Abernethy NF, Woody S, Dahan M, Fox S, Gaither K, Lachmann M, Meyers LA, Scott JG, Tec M, Srivastava A, George GE, Cegan JC, Dettwiller ID, England WP, Farthing MW, Hunter RH, Lafferty B, Linkov I, Mayo ML, Parno MD, Rowland MA, Trump BD, Zhang-James Y, Chen S, Faraone SV, Hess J, Morley CP, Salekin A, Wang D, Corsetti SM, Baer TM, Eisenberg MC, Falb K, Huang Y, Martin ET, McCauley E, Myers RL, Schwarz T, Sheldon D, Gibson GC, Yu R, Gao L, Ma Y, Wu D, Yan X, Jin X, Wang YX, Chen Y, Guo L, Zhao Y, Gu Q, Chen J, Wang L, Xu P, Zhang W, Zou D, Biegel H, Lega J, McConnell S, Nagraj VP, Guertin SL, Hulme-Lowe C, Turner SD, Shi Y, Ban X, Walraven R, Hong QJ, Kong S, van de Walle A, Turtle JA, Ben-Nun M, Riley S, Riley P, Koyluoglu U, DesRoches D, Forli P, Hamory B, Kyriakides C, Leis H, Milliken J, Moloney M, Morgan J, Nirgudkar N, Ozcan G, Piwonka N, Ravi M, Schrader C, Shakhnovich E, Siegel D, Spatz R, Stiefeling C, Wilkinson B, Wong A, Cavany S, Espaa G, Moore S, Oidtman R, Perkins A, Kraus D, Kraus A, Gao Z, Bian J, Cao W, Lavista Ferres J, Li C, Liu TY, Xie X, Zhang S, Zheng S, Vespignani A, Chinazzi M, Davis JT, Mu K, Pastore Y Piontti A, Xiong X, Zheng A, Baek J, Farias V, Georgescu A, Levi R, Sinha D, Wilde J, Perakis G, Bennouna MA, Nze-Ndong D, Singhvi D, Spantidakis I, Thayaparan L, Tsiourvas A, Sarker A, Jadbabaie A, Shah D, Della Penna N, Celi LA, Sundar S, Wolfinger R, Osthus D, Castro L, Fairchild G, Michaud I, Karlen D, Kinsey M, Mullany LC, Rainwater-Lovett K, Shin L, Tallaksen K, Wilson S, Lee EC, Dent J, Grantz KH, Hill AL, Kaminsky J, Kaminsky K, Keegan LT, Lauer SA, Lemaitre JC, Lessler J, Meredith HR, Perez-Saez J, Shah S, Smith CP, Truelove SA, Wills J, Marshall M, Gardner L, Nixon K, Burant JC, Wang L, Gao L, Gu Z, Kim M, Li X, Wang G, Wang Y, Yu S, Reiner RC, Barber R, Gakidou E, Hay SI, Lim S, Murray C, Pigott D, Gurung HL, Baccam P, Stage SA, Suchoski BT, Prakash BA, Adhikari B, Cui J, Rodrguez A, Tabassum A, Xie J, Keskinocak P, Asplund J, Baxter A, Oruc BE, Serban N, Arik SO, Dusenberry M, Epshteyn A, Kanal E, Le LT, Li CL, Pfister T, Sava D, Sinha R, Tsai T, Yoder N, Yoon J, Zhang L, Abbott S, Bosse NI, Funk S, Hellewell J, Meakin SR, Sherratt K, Zhou M, Kalantari R, Yamana TK, Pei S, Shaman J, Li ML, Bertsimas D, Skali Lami O, Soni S, Tazi Bouardi H, Ayer T, Adee M, Chhatwal J, Dalgic OO, Ladd MA, Linas BP, Mueller P, Xiao J, Wang Y, Wang Q, Xie S, Zeng D, Green A, Bien J, Brooks L, Hu AJ, Jahja M, McDonald D, Narasimhan B, Politsch C, Rajanala S, Rumack A, Simon N, Tibshirani RJ, Tibshirani R, Ventura V, Wasserman L, ODea EB, Drake JM, Pagano R, Tran QT, Ho LST, Huynh H, Walker JW, Slayton RB, Johansson MA, Biggerstaff M, Reich NG (2022). Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States. Proc Natl Acad Sci U S A, 119(15), e2113561119. (Read full article)
  8. Love J, Keegan LT, Angulo FJ, McLaughlin JM, Shea KM, Swerdlow DL, Samore MH, Toth DJA (2021). Continued need for non-pharmaceutical interventions after COVID-19 vaccination in long-term-care facilities. Sci Rep, 11(1), 18093. (Read full article)
  9. Love J, Wimmer MT, Toth DJA, Chandran A, Makhija D, Cooper CK, Samore MH, Keegan LT (2021). Comparison of antigen- and RT-PCR-based testing strategies for detection of SARS-CoV-2 in two high-exposure settings. PLoS One, 16(9), e0253407. (Read full article)
  10. Keegan LT, Stachel A, Blumberg S, CDC MInD Healthcare Program (2021). Modeling transmission of pathogens in healthcare settings. Curr Opin Infect Dis, 34(4), 333-338. (Read full article)
  11. Borchering RK, Viboud C, Howerton E, Smith CP, Truelove S, Runge MC, Reich NG, Contamin L, Levander J, Salerno J, van Panhuis W, Kinsey M, Tallaksen K, Obrecht RF, Asher L, Costello C, Kelbaugh M, Wilson S, Shin L, Gallagher ME, Mullany LC, Rainwater-Lovett K, Lemaitre JC, Dent J, Grantz KH, Kaminsky J, Lauer SA, Lee EC, Meredith HR, Perez-Saez J, Keegan LT, Karlen D, Chinazzi M, Davis JT, Mu K, Xiong X, Pastore Y Piontti A, Vespignani A, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Schlitt J, Corbett P, Telionis PA, Wang L, Peddireddy AS, Hurt B, Chen J, Vullikanti A, Marathe M, Healy JM, Slayton RB, Biggerstaff M, Johansson MA, Shea K, Lessler J (2021). Modeling of Future COVID-19 Cases, Hospitalizations, and Deaths, by Vaccination Rates and Nonpharmaceutical Intervention Scenarios - United States, April-September 2021. MMWR Morb Mortal Wkly Rep, 70(19), 719-724. (Read full article)
  12. Ahmed SM, Shah RU, Fernandez V, Grineski S, Brintz B, Samore MH, Ferrari MJ, Leung DT, Keegan LT (2021). Robust Testing in Outpatient Settings to Explore COVID-19 Epidemiology: Disparities in Race/Ethnicity and Age, Salt Lake County, Utah, 2020. Public Health Rep, 136(3), 345-353. (Read full article)
  13. Meredith HR, Arehart E, Grantz KH, Beams A, Sheets T, Nelson R, Zhang Y, Vinik RG, Barfuss D, Pettit JC, McCaffrey K, Dunn AC, Good M, Frattaroli S, Samore MH, Lessler J, Lee EC, Keegan LT (2021). Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus Disease, Utah, USA. Emerg Infect Dis, 27(5), 1259-1265. (Read full article)
  14. Lemaitre JC, Grantz KH, Kaminsky J, Meredith HR, Truelove SA, Lauer SA, Keegan LT, Shah S, Wills J, Kaminsky K, Perez-Saez J, Lessler J, Lee EC (2021). A scenario modeling pipeline for COVID-19 emergency planning. Sci Rep, 11(1), 7534. (Read full article)
  15. Khader K, Thomas A, Stevens V, Visnovsky L, Nevers M, Toth D, Keegan LT, Jones M, Rubin M, Samore MH (2021). Association Between Contact Precautions and Transmission of Methicillin-Resistant Staphylococcus aureus in Veterans Affairs Hospitals. JAMA Netw Open, 4(3), e210971. (Read full article)
  16. Reimer JR, Ahmed SM, Brintz B, Shah RU, Keegan LT, Ferrari MJ, Leung DT (2021). Using a clinical prediction rule to prioritize diagnostic testing leads to reduced transmission and hospital burden: A modeling example of early SARS-CoV-2. Clin Infect Dis, 73, 1822-1830. (Read full article)
  17. Brintz BJ, Haaland B, Howard J, Chao DL, Proctor JL, Khan AI, Ahmed SM, Keegan LT, Greene T, Keita AM, Kotloff KL, Platts-Mills JA, Nelson EJ, Levine AC, Pavia AT, Leung DT (2021). A modular approach to integrating multiple data sources into real-time clinical prediction for pediatric diarrhea. Elife, 10. (Read full article)
  18. Khader K, Munoz-Price LS, Hanson R, Stevens V, Keegan LT, Thomas A, Pezzin LE, Nattinger A, Singh S, Samore MH (2020). Transmission Dynamics of Clostridioides difficile in 2 High-Acuity Hospital Units. Clin Infect Dis, 72(Suppl 1), S1-S7. (Read full article)
  19. Khader K, Thomas A, Huskins WC, Stevens V, Keegan LT, Visnovsky L, Samore MH (2020). Effectiveness of Contact Precautions to Prevent Transmission of Methicillin-Resistant Staphylococcus aureus and Vancomycin-Resistant Enterococci in Intensive Care Units. Clin Infect Dis, 72(Suppl 1), S42-S49. (Read full article)
  20. Khader, K, Leecaster, M, Ray, W, Haroldsen, C, Keegan, LT, Samore, MH, and Rubin, M (2020). Evaluating Healthcare Worker Movements and Patient Interactions Within ICU Rooms. Infect Control Hosp Epidemiol, 41(S1), s222-s224.
  21. Toth DJA, Keegan LT, Samore MH, Khader K, OHagan JJ, Yu H, Quintana A, Swerdlow DL (2020). Modeling the potential impact of administering vaccines against Clostridioides difficile infection to individuals in healthcare facilities. Vaccine, 38(37), 5927-5932. (Read full article)
  22. Keegan LT, Truelove SA, Moss WJ, Chaisson LH, Macher E, Azman AS, Lessler J (2019). Clinical and Epidemiological Aspects of Diphtheria: A Systematic Review and Pooled Analysis. Clin Infect Dis, 71(1), 89-97. (Read full article)
  23. Kaminsky J, Keegan LT, Metcalf CJE, Lessler J (2019). Perfect counterfactuals for epidemic simulations. Philos Trans R Soc Lond B Biol Sci, 374(1776), 20180279. (Read full article)
  24. Lauer SA, Sakrejda K, Ray EL, Keegan LT, Bi Q, Suangtho P, Hinjoy S, Iamsirithaworn S, Suthachana S, Laosiritaworn Y, Cummings DAT, Lessler J, Reich NG (2018). Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, 2010-2014. Proc Natl Acad Sci U S A, 115(10), E2175-E2182. (Read full article)
  25. Keegan LT, Lessler J, Johansson MA (2017). Quantifying Zika: Advancing the Epidemiology of Zika With Quantitative Models. J Infect Dis, 216(suppl_10), S884-S890. (Read full article)
  26. Keegan LT, Dushoff J (2016 May 21). Estimating finite-population reproductive numbers in heterogeneous populations. J Theor Biol, 397, 1-12.
  27. Keegan LT, Dushoff JD (2014). Analytic Calculations of finite-population reproductive numbers for direct- and vector-transmitted diseases with homogeneous mixing. Bull Math Biol, 76(5), 1143-54.
  28. Keegan LT, Dushoff J (2013). Population-level effects of clinical immunity to malaria. BMC Infect Dis, 13, 428.

Book Chapter

  1. Keegan LT, Metcalf CJE, Bowles L, Lessler J (2023). Transmission dynamics, modeling of out- breaks and interventions. In Viral Outbreaks, Bioterrorism and Preparing for Mass Casualty Infectious Disease Events (1st Edition). Elsevier.

Conference Proceedings

  1. Keegan LT, Keegan W, Carlson L, Altes C (2009). Shell Net Weights from Florida and Puerto Rico, Proceedings of the XXIII International Congress for Caribbean Archaeology.

Editorial

  1. Buckee, C, Hedt-Gauthier, B, Mahmud, A, Martinez, P, Tedijanto, C, Murray, M, Khan, R, Menkir, T, Suliman, S, Fosdick, B, Cobey, S, Rasmussen, A, Popescu, S, Cevik, M, Dada, S, Fowkes, F, Clapham, H, Mordecai, E, Hampson, K, Majumder, M, Wesolowski, A, Kup-palli, K, Rodriguez Barraquer, I, Smith, TC, Hodcroft, E, Christofferson, RC, Cormier, SA, Gerardin, J, Cowley, L, Childs, L, Keegan, LT, Pitzer, V, Oldenburg, C (2020). Women in science are battling COVID-19 and patriarchy at the same time.

Other

  1. Kaminsky, J, Lee, EC, kkintaro, Lemaitre, JC, Grantz, KH, Meredith, HR, Truelove, SA, Shah, S, Lauer, SA, Whol, SH, epicfarmer, Pierre-Yves, Lessler, J, Keegan LT, Landroid, Willis, J (2020). GitHub Software. Zendo.
  2. Maloney, M, Morley, R, Checketts, R, Weir, P, Barfuss, D, Meredith, HR, Samore, MH, Keegan, LT (2020). GitHub Software. Zendo.

Report

  1. Asher J, Barker C, Bowles L, Chen G, Chinazzi M, Cumming D, Daniel-Wayman S, Ferguson N, Fischer M, Follman D, Halloran E, Johansson M, Joshi K, Kaminsky J, Keegan L, Kugeler K, Kwan J, Lessler J, Longini I, Monaghan A, Moore S, Pastore y Piontti A, Perkins A, Prevots R, Reich N, Reiner R, Rodriguez-Barraquer I, Siraj A, Sun K, Vespignani A, Zhang Q (2017). Updated Results of Models to Predict Areas in the Americas with Increased Likelihood of Zika Virus Transmission in 2017.